Gene omics information

Query gene ID	Contig8820_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8820_at	Contig8820	-	-	2e+0	At4g19270	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig9959_at	Contig9959	-	-	4e-4	At1g02840	SR1	S.X.	H.G.	Please select
0.67	84.7	Contig10011_at	Contig10011	-	-	1e+0	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	S.X.	H.G.	Please select
0.67	84.7	EBan01_SQ002_F13_at	EBan01_SQ002_F13	-	-	3e-1	At3g52230	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig6434_at	Contig6434	-	-	3e-9	At1g07310	C2 domain-containing protein	S.X.	H.G.	Please select
0.50	66.9	Contig25064_at	Contig25064	-	-	1e+0	At1g54215	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
174.5	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
168.5	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
59.7	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
0.0	29.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
0.0	29.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
0.0	29.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
0.0	29.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
0.0	29.9	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM311204	28-4_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1679	Contig8819_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.88	0	1679	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.27	1e-40	167	Contig18714_at	Contig18714	-	-	2e+0	At1g67635	-	C.G.	S.X.	Please select
0.08	6e-21	101	EBan01_SQ002_N10_x_at	EBan01_SQ002_N10	-	-	3e+0	At4g17850	-	C.G.	S.X.	Please select
0.13	2e-14	79	Contig8009_at	Contig8009	-	-	3e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.10	2e-11	69	Contig7394_at	Contig7394	-	-	1e+1	At5g54340	zinc finger (C2H2 type) protein-related	C.G.	S.X.	Please select
0.05	2e-5	50	Contig2878_at	Contig2878	-	-	4e-1	At3g49630	2-oxoacid-dependent oxidase, putative	C.G.	S.X.	Please select
0.09	3e-4	46	Contig2876_at	Contig2876	-	-	5e-2	At5g17120	-	C.G.	S.X.	Please select
0.08	2e-2	40	Contig2877_at	Contig2877	-	-	6e-1	At4g19270	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g19270	827667	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.CL1410Contig1_at	PsAffx.CL1410Contig1	-	-	8e+0	At5g42785	unknown protein	C.G.	S.X.	Please select
0.32	1e-59	232	Oryza sativa	Os03g0106500	U31771.1	-	Beta-expansin precursor (Beta-expansin 1)	3e+0	At1g54860	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.52407.1.S1_s_at	CV274109	hypothetical protein	-	5e+0	At4g29285	LCR24 (Low-molecular-weight cysteine-rich 24)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	948	Triticum aestivum	Ta.14414.1.S1_at	AY543539.1	expansin EXPB4	-	3e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622197_at	CF403402	hypothetical protein LOC100265428	-	2e-1	At5g14600	tRNA (adenine-N1-)-methyltransferase	C.G.	S.X.	Please select
0.26	9e-23	107	Zea mays	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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