Gene omics information

Query gene ID	Contig8795_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.91	98.1	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.67	84.7	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.50	66.9	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	S.X.	H.G.	Please select
0.43	56.4	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	S.X.	H.G.	Please select
0.25	28.9	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.4	99.0	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1	98.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.3	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.3	98.8	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.7	98.6	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Contig8892_at	Contig8892	flowering time control protein	-	4e-13	At4g16280	FCA	C.G.	S.X.	Please select
0.01	2e-2	40	Contig5332_at	Contig5332	-	-	3e+0	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig10963_at	Contig10963	-	-	2e+0	At4g33640	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	38	Contig14328_at	Contig14328	-	-	5e-8	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig5521_s_at	Contig5521	-	-	6e-2	At5g62810	PEX14	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4644_at	Contig4644	-	-	3e-7	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig11819_s_at	Contig11819	-	-	3e-3	At1g08320	bZIP family transcription factor	C.G.	S.X.	Please select
0.04	3e-1	36	Contig24100_at	Contig24100	-	-	4e-1	At5g66370	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	HVSMEn0013N19f_s_at	HVSMEn0013N19f	-	-	1e+0	At4g36100	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At2g26500	817191	cytochrome b6f complex subunit (petM), putative	F:plastoquinol-plastocyanin reductase activity;P:unknown;C:chloroplast thylakoid membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.12	1e-15	85	Oryza sativa	Os05g0126300	CB635555	-	Conserved hypothetical protein	1e-2	At3g57740	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-2	42	Populus trichocarpa	PtpAffx.220172.1.S1_at	pmrna36526	-	-	2e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	4e-2	40	Triticum aestivum	Ta.30667.1.A1_at	AY230404.1	-	-	7e-1	Atmg01370	-	C.G.	S.X.	Please select
0.04	7e-1	34	Vitis vinifera	1610630_at	CB002854	hypothetical protein LOC100260347	-	3e-14	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.10	3e-7	56	Zea mays	Zm.6964.1.S1_at	AI665995	-	-	6e-2	At4g22320	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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