Gene omics information

Query gene ID	Contig8790_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	S.X.	H.G.	Please select
0.56	74.3	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select
0.53	69.7	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.50	66.9	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	S.X.	H.G.	Please select
0.33	42.6	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	S.X.	H.G.	Please select
0.27	32.1	Contig20222_at	Contig20222	-	-	3e-14	At3g07990	SCPL27 (serine carboxypeptidase-like 27)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.4	99.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
17.9	99.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
17.9	99.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
17.3	99.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.4	99.4	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
12.7	99.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.0	99.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.9	99.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	714	Contig11724_at	Contig11724	-	-	8e-11	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.32	1e-177	623	HU05J12u_at	HU05J12u	-	-	4e+0	At1g12180	-	C.G.	S.X.	Please select
0.08	7e-22	105	Contig16124_at	Contig16124	-	-	9e-3	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.04	4e-5	50	Contig17814_at	Contig17814	-	-	1e-25	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.04	5e-4	46	Contig5016_at	Contig5016	-	-	1e-30	At2g47060	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	C.G.	S.X.	Please select
0.01	2e-3	44	Contig11369_at	Contig11369	-	-	3e-12	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig9756_at	Contig9756	-	-	2e-47	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	3e-2	40	Contig8990_at	Contig8990	-	-	3e-10	At2g02800	APK2B (PROTEIN KINASE 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	8e-17	89	Arabidopsis thaliana	At5g02800	831285	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	3e-23	111	Glycine max	GmaAffx.86611.1.S1_at	BI316735	-	-	2e-34	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.46	0	1084	Oryza sativa	Os01g0936100	AK101371.1	-	Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1)	7e-30	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	2e-73	278	Populus trichocarpa	PtpAffx.224616.1.S1_at	pmrna43321	serine/threonine protein kinase PBS1	-	3e-80	At5g18610	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	0	1271	Triticum aestivum	Ta.27964.1.S1_at	CD920460	-	-	1e-2	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.20	2e-24	113	Vitis vinifera	1619555_at	AY395743.1	hypothetical protein LOC100250154	-	3e-61	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.27	1e-131	470	Zea mays	Zm.12926.1.A1_at	CF634151	hypothetical protein LOC100278966	-	3e-6	At5g02800	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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