Gene omics information

Query gene ID	Contig8787_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig8787_s_at	Contig8787	-	-	3e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.71	87.1	HS09F12u_s_at	HS09F12u	-	-	7e-1	At2g33780	VQ motif-containing protein	S.X.	H.G.	Please select
0.55	72.0	Contig8788_at	Contig8788	-	-	2e+0	At3g12630	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.42	55.2	Contig13809_at	Contig13809	-	-	3e-2	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	S.X.	H.G.	Please select
0.36	47.1	Contig9449_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.36	47.1	Contig13825_at	Contig13825	-	-	2e-1	At2g32440	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.0	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
9.1	98.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
7.2	98.5	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
7.2	98.5	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.8	98.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.4	98.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.4	98.1	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	841	Contig8788_at	Contig8788	-	-	2e+0	At3g12630	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.04	2e+0	32	HV10J10u_x_at	HV10J10u	-	-	2e-4	At2g24200	cytosol aminopeptidase	C.G.	S.X.	Please select
0.04	2e+0	32	HT01A09w_at	HT01A09w	-	-	5e+0	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10400_s_at	Contig10400	-	-	4e-5	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.04	2e+0	32	HV10J10u_at	HV10J10u	-	-	2e-4	At2g24200	cytosol aminopeptidase	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10399_at	Contig10399	-	-	3e-5	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.01	6e+0	30	Contig10313_at	Contig10313	-	-	1e-18	At4g34830	-	C.G.	S.X.	Please select
0.01	6e+0	30	Contig5748_at	Contig5748	-	-	6e-2	At4g32330	-	C.G.	S.X.	Please select
0.06	6e+0	30	Contig26428_at	Contig26428	-	-	4e-1	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g11340	831005	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.87031.1.S1_at	AW507869	-	-	1e-3	At5g21100	L-ascorbate oxidase, putative	C.G.	S.X.	Please select
0.21	1e-32	141	Oryza sativa	Os03g0247000	AK100847.1	-	Clp, N terminal domain containing protein	6e-1	At4g12060	Clp amino terminal domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	Ptp.7986.1.S1_at	DN502987	hypothetical protein	-	2e-1	At3g19930	STP4 (SUGAR TRANSPORTER 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	9e-84	309	Triticum aestivum	Ta.7195.2.S1_a_at	CA617950	-	-	2e+0	At3g12630	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1620556_at	CF208984	hypothetical protein LOC100261914	-	4e+0	At5g63150	unknown protein	C.G.	S.X.	Please select
0.17	1e-13	75	Zea mays	Zm.5177.1.A1_at	AY105486.1	-	-	2e+0	At5g03710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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