Gene omics information

Query gene ID	Contig8766_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig8766_at	Contig8766	-	-	8e-7	At4g12130	aminomethyltransferase	S.X.	H.G.	Please select
0.55	72.0	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	S.X.	H.G.	Please select
0.47	62.2	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.44	58.9	Contig11618_at	Contig11618	-	-	5e+0	At2g11890	adenylate cyclase	S.X.	H.G.	Please select
0.42	55.2	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.32	40.3	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
73.1	100.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
50.5	99.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
44.1	99.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
32.6	99.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
24.7	99.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.0	99.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.5	99.6	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
10.0	99.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.4	98.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	36	Contig11913_at	Contig11913	-	-	1e-1	At3g17160	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig2360_at	Contig2360	-	-	2e-27	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.02	2e+0	34	EBem05_SQ002_F23_at	EBem05_SQ002_F23	-	-	6e-2	At4g25190	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig20936_at	Contig20936	-	-	3e-5	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3020_at	Contig3020	-	-	5e-107	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8747_at	Contig8747	-	-	9e-16	At1g79470	inosine-5'-monophosphate dehydrogenase	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7569_at	Contig7569	-	-	9e-7	At1g16190	DNA repair protein RAD23, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5367_at	Contig5367	-	-	6e-5	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	C.G.	S.X.	Please select
0.01	6e+0	32	rbags21b15_at	rbags21b15	-	-	1e+0	At5g57887	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-7	56	Arabidopsis thaliana	At4g12130	826821	aminomethyltransferase	F:aminomethyltransferase activity;P:glycine catabolic process;C:cytoplasm;OBFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-6	54	Glycine max	GmaAffx.80998.1.S1_at	BE611879	-	-	2e-17	At4g12130	aminomethyltransferase	C.G.	S.X.	Please select
0.53	2e-144	513	Oryza sativa	Os06g0134800	AK063692.1	-	Glycine cleavage T protein (aminomethyltransferase) family protein	2e-10	At4g12130	aminomethyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-9	63	Populus trichocarpa	PtpAffx.81117.2.S1_at	CK318012	-	-	9e-19	At4g12130	aminomethyltransferase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	1267	Triticum aestivum	Ta.5840.1.S1_at	BJ306840	-	-	2e-7	At4g12130	aminomethyltransferase	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1621891_at	CF415470	hypothetical protein LOC100242841	-	8e-2	At5g41520	40S ribosomal protein S10 (RPS10B)	C.G.	S.X.	Please select
0.41	3e-66	252	Zea mays	Zm.13636.1.S1_at	AY107313.1	aminomethyltransferase	-	3e+0	At5g41030	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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