Gene omics information

Query gene ID	Contig8742_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	S.X.	H.G.	Please select
0.55	72.0	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.40	53.1	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	S.X.	H.G.	Please select
0.39	50.5	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.31	38.6	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-74	280	HU12N06u_x_at	HU12N06u	-	-	5e-1	At1g29962	AGL64 (AGAMOUS-LIKE 64)	C.G.	S.X.	Please select
0.20	2e-74	280	HU12N06u_at	HU12N06u	-	-	5e-1	At1g29962	AGL64 (AGAMOUS-LIKE 64)	C.G.	S.X.	Please select
0.12	2e-19	97	Contig8103_at	Contig8103	-	-	4e-2	At3g53235	unknown protein	C.G.	S.X.	Please select
0.12	2e-19	97	Contig8103_s_at	Contig8103	-	-	4e-2	At3g53235	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	EBem05_SQ002_E11_at	EBem05_SQ002_E11	-	-	1e+0	At3g30580	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4199_at	Contig4199	-	-	2e-14	At1g72280	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig17817_at	Contig17817	-	-	5e-1	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig3593_at	Contig3593	-	-	4e-5	At5g64780	-	C.G.	S.X.	Please select
0.01	5e-1	36	Contig12461_at	Contig12461	-	-	3e+0	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-6	56	Arabidopsis thaliana	At3g61600	825333	ATPOB1	POZ/BTB containing-protein AtPOB1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	7e-18	93	Glycine max	Gma.4377.1.S1_at	CD393079	-	-	2e-18	At2g46260	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.65	0	1267	Oryza sativa	Os06g0507400	AK066411.1	-	BTB/POZ domain containing protein	3e-10	At3g61600	ATPOB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-16	89	Populus trichocarpa	PtpAffx.7210.2.A1_a_at	BP930061	hypothetical protein	-	1e-9	At2g46260	BTB/POZ domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	4e-111	402	Triticum aestivum	Ta.28580.1.S1_at	CA678463	-	-	4e-9	At2g46260	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.07	2e-8	59	Vitis vinifera	1608543_at	CF518889	hypothetical protein LOC100263773	-	1e-14	At3g61600	ATPOB1	C.G.	S.X.	Please select
0.29	5e-115	414	Zea mays	Zm.19265.1.A1_at	CA400540	GAMYB-binding protein	-	3e-14	At2g46260	BTB/POZ domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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