Gene omics information

Query gene ID	Contig8740_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	89.8	Contig8740_at	Contig8740	-	-	8e-3	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	S.X.	H.G.	Please select
0.57	74.9	Contig13312_at	Contig13312	-	-	5e+0	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	S.X.	H.G.	Please select
0.56	74.3	Contig16853_at	Contig16853	-	-	6e-4	At2g02370	-	S.X.	H.G.	Please select
0.55	72.0	Contig10600_s_at	Contig10600	-	-	3e+0	At3g19220	SCO2 (SNOWY COTYLEDON 2)	S.X.	H.G.	Please select
0.54	70.3	rbaal35o24_at	rbaal35o24	-	-	1e+0	At4g04360	unknown protein	S.X.	H.G.	Please select
0.54	70.3	HV05A09u_s_at	HV05A09u	-	-	3e+0	At4g09250	-	S.X.	H.G.	Please select
0.49	63.7	Contig2784_at	Contig2784	-	-	2e-13	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	S.X.	H.G.	Please select
0.45	59.3	Contig9756_at	Contig9756	-	-	2e-47	At3g62220	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig3877_s_at	Contig3877	-	-	1e-4	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	S.X.	H.G.	Please select
0.44	58.9	rbaal38l09_s_at	rbaal38l09	-	-	1e+0	At5g50423	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	99.8	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
23.7	99.8	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
20.3	99.7	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
16.3	99.6	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.4	99.6	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.8	99.5	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.7	99.5	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.4	99.4	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.1	99.2	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.9	99.1	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	977	Contig8739_at	Contig8739	-	-	3e-6	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.02	6e-2	38	Contig11037_at	Contig11037	-	-	7e+0	At5g23908	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig12596_at	Contig12596	-	-	5e-48	At4g35250	vestitone reductase-related	C.G.	S.X.	Please select
0.02	6e-2	38	Contig9071_at	Contig9071	-	-	4e-8	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8200_at	Contig8200	-	-	2e-7	At1g25220	ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7543_at	Contig7543	-	-	3e-22	At1g68820	membrane protein, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Contig11492_at	Contig11492	-	-	4e+0	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig8981_at	Contig8981	-	-	3e-10	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	HA10M21u_at	HA10M21u	-	-	2e-1	At1g07440	tropinone reductase, putative / tropine dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-3	42	Arabidopsis thaliana	At3g16150	820860	L-asparaginase, putative / L-asparagine amidohydrolase, putative	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	8e-13	75	Glycine max	Gma.1179.1.S1_at	AY096000.1	L-asparaginase	-	5e-39	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.46	1e-120	434	Oryza sativa	Os04g0650700	AK058733.1	-	L-asparaginase (L-asparagine amidohydrolase)	1e-1	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.47668.1.A1_at	CV254098	hypothetical protein	-	2e-9	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	771	Triticum aestivum	Ta.3504.1.A1_at	CK163751	-	-	1e+0	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.07	6e-1	34	Vitis vinifera	1614789_at	BQ799243	hypothetical protein LOC100248834	-	7e-9	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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