Gene omics information

Query gene ID	Contig8739_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	94.5	Contig8739_at	Contig8739	-	-	3e-6	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	S.X.	H.G.	Please select
0.79	91.4	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.75	89.5	Contig5246_s_at	Contig5246	-	-	3e-13	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please select
0.70	86.0	Contig4656_at	Contig4656	-	-	1e-3	At5g60570	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.69	85.5	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	S.X.	H.G.	Please select
0.66	81.5	Contig4574_at	Contig4574	-	-	7e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	S.X.	H.G.	Please select
0.64	80.9	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.63	80.3	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	S.X.	H.G.	Please select
0.62	79.1	Contig5248_s_at	Contig5248	-	-	4e+0	At5g34882	-	S.X.	H.G.	Please select
0.62	79.1	Contig6484_at	Contig6484	-	-	2e-1	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.6	99.7	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.3	99.6	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.0	99.6	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.0	99.5	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.9	99.5	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.5	99.5	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.6	99.5	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.6	99.5	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.2	99.4	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.0	99.4	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	977	Contig8740_at	Contig8740	-	-	8e-3	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.01	2e-2	40	Contig8872_at	Contig8872	-	-	1e-5	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig12596_at	Contig12596	-	-	5e-48	At4g35250	vestitone reductase-related	C.G.	S.X.	Please select
0.01	3e-1	36	Contig7203_at	Contig7203	-	-	2e-7	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig3143_at	Contig3143	-	-	2e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig758_at	Contig758	-	-	4e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig12147_at	Contig12147	-	-	2e-3	At5g64260	EXL2 (EXORDIUM LIKE 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8356_s_at	Contig8356	-	-	8e-10	At1g11190	BFN1 (BIFUNCTIONAL NUCLEASE I)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-6	54	Arabidopsis thaliana	At3g16150	820860	L-asparaginase, putative / L-asparagine amidohydrolase, putative	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	8e-23	109	Glycine max	Gma.1179.1.S1_at	AY096000.1	L-asparaginase	-	5e-39	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.66	0	1055	Oryza sativa	Os04g0650700	AK058733.1	-	L-asparaginase (L-asparagine amidohydrolase)	1e-1	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.217947.1.S1_at	pmrna33418	hypothetical protein	-	2e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	698	Triticum aestivum	Ta.3504.1.A1_at	CK163751	-	-	1e+0	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1614789_at	BQ799243	hypothetical protein LOC100248834	-	7e-9	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Zea mays	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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