Gene omics information

Query gene ID	Contig871_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	80.9	Contig871_s_at	Contig871	-	-	1e+0	At4g37530	peroxidase, putative	S.X.	H.G.	Please select
0.52	68.3	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.44	58.9	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig14472_at	Contig14472	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	S.X.	H.G.	Please select
0.42	55.2	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.41	53.9	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.36	47.1	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	S.X.	H.G.	Please select
0.36	47.1	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	S.X.	H.G.	Please select
0.33	42.6	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
12.1	99.3	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
10.8	99.2	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.4	99.2	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
10.4	99.2	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.2	99.1	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
9.8	99.1	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
9.6	99.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
9.6	99.0	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
9.2	99.0	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	724	Contig959_x_at	Contig959	-	-	5e+0	At3g59840	unknown protein	C.G.	S.X.	Please select
0.86	0	698	Contig717_x_at	Contig717	-	-	6e+0	At3g59840	unknown protein	C.G.	S.X.	Please select
0.64	3e-142	504	Contig972_x_at	Contig972	-	-	2e+0	At1g10840	TIF3H1	C.G.	S.X.	Please select
0.41	9e-133	472	Contig824_at	Contig824	-	-	1e+1	At5g48270	unknown protein	C.G.	S.X.	Please select
0.42	3e-105	381	X68656_s_at	X68656	-	-	5e+0	At1g14120	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.23	3e-46	184	rbasd16a13_s_at	rbasd16a13	-	-	7e-1	At5g61340	unknown protein	C.G.	S.X.	Please select
0.39	7e-38	157	HK03H11r_x_at	HK03H11r	-	-	8e+0	At3g22050	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.40	3e-28	125	Contig845_at	Contig845	-	-	2e+0	At1g63522	-	C.G.	S.X.	Please select
0.40	3e-28	125	Contig845_s_at	Contig845	-	-	2e+0	At1g63522	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At4g37530	829908	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:endomembrane system;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.CL1690Contig1_at	PsAffx.CL1690Contig1	-	-	3e+0	At4g24026	unknown protein	C.G.	S.X.	Please select
0.14	4e-21	103	Oryza sativa	Os11g0115400	AF017361.1	-	Nonspecific lipid-transfer protein precursor (LTP)(Phospholipid transfer protein) (PLTP) (Allergen Zea m14)	1e-3	At1g74630	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.9487.1.A1_at	BU876574	hypothetical protein	-	4e-10	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	2e-107	389	Triticum aestivum	Ta.23917.3.S1_x_at	CN012788	Type 1 non-specific lipid transfer protein precursor	-	3e-1	At5g62860	F-box family protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1614053_at	CF516548	hypothetical protein LOC100252212	-	5e-1	At1g58007	unknown protein	C.G.	S.X.	Please select
0.12	2e-19	95	Zea mays	Zm.714.1.A1_at	U66105.1	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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