Gene omics information

Query gene ID	Contig8708_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.50	66.9	HY05C09u_x_at	HY05C09u	-	-	2e-1	At1g58420	-	S.X.	H.G.	Please select
0.50	66.9	EBma03_SQ002_M18_at	EBma03_SQ002_M18	-	-	2e+0	At5g65300	unknown protein	S.X.	H.G.	Please select
0.38	49.5	HA10M13u_x_at	HA10M13u	-	-	6e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.31	38.6	HW08A07u_at	HW08A07u	-	-	4e-1	At5g36805	-	S.X.	H.G.	Please select
0.19	19.6	HD05A17r_at	HD05A17r	-	-	5e-3	At5g17710	EMB1241 (embryo defective 1241)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
50.0	99.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
47.4	99.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
18.5	99.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.8	99.6	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
16.3	99.6	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
15.4	99.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
14.9	99.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
14.4	99.5	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.4	99.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.6	99.5	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-14	79	Contig2133_x_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.14	3e-14	79	Contig2133_s_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.11	3e-14	79	Contig2134_at	Contig2134	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.15	4e-10	65	Contig13823_at	Contig13823	-	-	2e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please select
0.04	6e-6	52	Contig8208_at	Contig8208	-	-	2e-7	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	2e-5	50	Contig3401_at	Contig3401	-	-	7e-1	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.03	2e-5	50	Contig6816_at	Contig6816	-	-	2e+0	At4g13640	UNE16 (unfertilized embryo sac 16)	C.G.	S.X.	Please select
0.03	9e-5	48	rbags1d02_at	rbags1d02	-	-	2e-2	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	4e-4	46	Contig11511_at	Contig11511	-	-	8e-3	At5g46030	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	38	Arabidopsis thaliana	At5g50790	835151	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-6	56	Glycine max	GmaAffx.76027.1.S1_at	BI469139	-	-	3e-14	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.41	2e-172	607	Oryza sativa	Os02g0513100	AK103266.1	-	NEC1	1e-5	At4g25010	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-2	42	Populus trichocarpa	PtpAffx.212901.1.S1_at	pmrna25247	hypothetical protein	-	7e-9	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	1184	Triticum aestivum	TaAffx.33265.1.S1_at	CK205806	-	-	1e-2	At4g25010	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.04	1e-5	50	Vitis vinifera	1615375_at	BQ794348	hypothetical protein LOC100267921	-	2e+0	At3g48740	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.18	4e-65	248	Zea mays	Zm.13688.1.S1_at	AY106837.1	MTN3	-	2e+0	At3g55070	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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