Gene omics information

Query gene ID	Contig8703_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8703_at	Contig8703	-	-	2e-42	At3g21720	ICL (ISOCITRATE LYASE)	S.X.	H.G.	Please select
0.80	92.5	rbaal21l24_s_at	rbaal21l24	-	-	5e-1	At4g34720	AVA-P1	S.X.	H.G.	Please select
0.77	90.8	Contig20805_at	Contig20805	-	-	6e-1	At1g47300	F-box family protein	S.X.	H.G.	Please select
0.73	88.7	Contig3172_at	Contig3172	-	-	3e-9	At1g22280	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.73	88.7	Contig10131_at	Contig10131	-	-	2e-7	At5g16710	DHAR3 (dehydroascorbate reductase 1)	S.X.	H.G.	Please select
0.67	84.7	Contig22054_at	Contig22054	-	-	8e-2	At2g02440	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.4	99.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
28.2	99.8	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
27.6	99.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.9	99.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
18.6	99.7	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
15.9	99.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
15.2	99.5	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
13.4	99.4	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
12.3	99.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.7	99.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-3	42	Contig10466_at	Contig10466	glycosyltransferase	-	1e+1	At4g31020	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	HVSMEn0016F09r2_at	HVSMEn0016F09r2	-	-	2e+1	Atmg01370	-	C.G.	S.X.	Please select
0.02	1e-1	38	HVSMEn0016F09r2_s_at	HVSMEn0016F09r2	-	-	2e+1	Atmg01370	-	C.G.	S.X.	Please select
0.01	1e-1	38	Contig6168_at	Contig6168	-	-	6e-2	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig14427_at	Contig14427	-	-	1e-2	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig14273_at	Contig14273	-	-	2e+0	At1g24480	methyltransferase	C.G.	S.X.	Please select
0.01	5e-1	36	Contig13658_at	Contig13658	-	-	2e-1	At1g69490	NAP (NAC-like, activated by AP3/PI)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4113_at	Contig4113	-	-	2e+0	At4g29190	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13717_at	Contig13717	-	-	8e-22	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-42	174	Arabidopsis thaliana	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	4e-13	77	Glycine max	Gma.52.1.S1_at	AW200671	-	-	1e-27	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select
0.71	0	1859	Oryza sativa	Os07g0529000	AK103744.1	-	Isocitrate lyase (EC 4.1.3.1) (Isocitrase)(Isocitratase) (ICL)	2e-39	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-10	67	Populus trichocarpa	Ptp.3895.1.S1_at	BU862927	-	-	4e-14	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	0	1318	Triticum aestivum	TaAffx.99992.1.S1_at	CA593620	-	-	5e-35	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1617323_at	CF373223	hypothetical protein LOC100252590	-	4e-7	At1g55340	unknown protein	C.G.	S.X.	Please select
0.35	3e-122	438	Zea mays	Zm.13863.1.A1_at	U69129.1	isocitrate lyase	-	4e-9	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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