Gene omics information

Query gene ID	Contig8666_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig8666_at	Contig8666	-	-	1e-30	At3g10420	sporulation protein-related	S.X.	H.G.	Please select
0.29	35.5	Contig9165_at	Contig9165	-	-	2e-3	At4g31410	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig9296_at	Contig9296	-	-	1e-1	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	S.X.	H.G.	Please select
0.21	22.6	Contig9688_s_at	Contig9688	-	-	7e+0	At5g52970	thylakoid lumen 15.0 kDa protein	S.X.	H.G.	Please select
0.12	10.4	Contig16156_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	S.X.	H.G.	Please select
0.07	5.8	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.4	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.1	99.3	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.2	99.2	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.0	98.4	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.9	97.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-5	50	Contig12046_at	Contig12046	-	-	6e+0	At3g14060	unknown protein	C.G.	S.X.	Please select
0.02	3e-5	50	Contig8086_at	Contig8086	-	-	2e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	3e-5	50	Contig5950_s_at	Contig5950	-	-	4e-4	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select
0.02	3e-5	50	Contig3134_s_at	Contig3134	-	-	5e-6	At4g00860	ATOZI1	C.G.	S.X.	Please select
0.02	1e-4	48	Contig7171_s_at	Contig7171	-	-	1e-1	At2g30115	-	C.G.	S.X.	Please select
0.02	1e-4	48	Contig7093_at	Contig7093	-	-	3e-2	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.01	1e-4	48	Contig17970_at	Contig17970	-	-	5e-1	At5g17350	unknown protein	C.G.	S.X.	Please select
0.01	1e-4	48	Contig13434_at	Contig13434	-	-	6e-10	At4g38520	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.02	1e-4	48	Contig23878_x_at	Contig23878	-	-	1e+0	At5g63480	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-30	135	Arabidopsis thaliana	At3g10420	820206	sporulation protein-related	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-2	40	Glycine max	Gma.13388.1.S1_s_at	CD397245	-	-	2e+0	At4g00120	IND (INDEHISCENT)	C.G.	S.X.	Please select
0.65	0	989	Oryza sativa	Os07g0187400	9635.m00855	-	AAA ATPase domain containing protein	4e-34	At3g10420	sporulation protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-44	180	Populus trichocarpa	PtpAffx.209432.1.S1_at	pmrna18676	hypothetical protein	-	3e-145	At3g10420	sporulation protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	0	664	Triticum aestivum	Ta.18848.1.S1_at	CA643030	-	-	6e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Vitis vinifera	1621823_at	CF214240	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.2076.1.A1_a_at	CF004592	40S ribosomal protein S16	-	2e+0	At5g18380	40S ribosomal protein S16 (RPS16C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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