Gene omics information

Query gene ID	Contig8661_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig7256_at	Contig7256	-	-	4e-8	At1g52870	peroxisomal membrane protein-related	S.X.	H.G.	Please select
0.48	63.2	HZ45N21r_at	HZ45N21r	-	-	3e+0	At3g49330	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.46	61.0	Contig7255_at	Contig7255	-	-	6e+0	At3g26147	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig3751_at	Contig3751	-	-	2e+0	At5g24170	-	C.G.	S.X.	Please select
0.02	4e-2	38	Contig5862_at	Contig5862	-	-	1e-3	At4g36890	IRX14 (irregular xylem 14)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig9093_at	Contig9093	-	-	8e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig8031_at	Contig8031	-	-	2e-47	At1g69740	HEMB1	C.G.	S.X.	Please select
0.02	1e-1	36	Contig6075_at	Contig6075	-	-	3e+0	At4g28940	catalytic	C.G.	S.X.	Please select
0.01	1e-1	36	Contig4930_at	Contig4930	-	-	8e-8	At5g20710	BGAL7 (beta-galactosidase 7)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig2083_s_at	Contig2083	photosystem-I PSI-F subunit precursor	-	6e-7	At1g31330	PSAF (photosystem I subunit F)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	C.G.	S.X.	Please select
0.02	1e-1	36	Contig9728_at	Contig9728	-	-	4e-1	At1g58100	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+0	34	Arabidopsis thaliana	At3g48298	6240797	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-2	40	Glycine max	PsAffx.C10000031_s_at	PsAffx.C10000031	-	-	2e-1	At3g16510	C2 domain-containing protein	C.G.	S.X.	Please select
0.44	5e-69	262	Oryza sativa	Os.11308.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.222363.1.S1_s_at	pmrna39716	hypothetical protein	-	3e+0	At5g03520	ATRAB8C	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	4e-99	361	Triticum aestivum	Ta.14235.3.S1_x_at	CA682509	-	-	8e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.04	9e-2	36	Vitis vinifera	1610917_at	CD715674	-	-	2e-2	At3g14670	unknown protein	C.G.	S.X.	Please select
0.36	1e-54	212	Zea mays	Zm.17438.1.A1_at	CK347582	VP15	-	3e-1	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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