CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8594_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig8594_at Contig8594 - - 2e-17 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) S.X. H.G.
0.61 78.7 Contig3477_at Contig3477 - - 0 At5g66760 SDH1-1 S.X. H.G.
0.43 56.4 HA10D18u_x_at HA10D18u - - 2e-1 At1g01100 60S acidic ribosomal protein P1 (RPP1A) S.X. H.G.
0.40 53.1 HVSMEa0022N20f_at HVSMEa0022N20f - - 7e-20 Atcg00630 - S.X. H.G.
0.40 53.1 Contig2095_s_at Contig2095 - - 7e-1 At3g49845 - S.X. H.G.
0.27 32.1 Contig3143_at Contig3143 - - 2e-5 At2g23350 PAB4 (POLY(A) BINDING PROTEIN 4) S.X. H.G.
0.14 12.9 HK06E16r_s_at HK06E16r - - 3e+0 At5g51520 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.1 99.6 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.1 99.6 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
14.0 99.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
13.2 99.4 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
11.9 99.3 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
10.1 99.1 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.5 98.8 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.1 98.0 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-12 73 Contig11040_at Contig11040 - - 4e-8 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.03 6e-3 42 HV_CEb0014M10r2_at HV_CEb0014M10r2 - - 3e-4 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.02 4e-1 36 HVSMEl0003E22r2_at HVSMEl0003E22r2 - - 5e+0 At5g60430 antiporter/ drug transporter C.G. S.X.
0.01 2e+0 34 Contig15497_at Contig15497 - - 7e+0 At5g62576 unknown protein C.G. S.X.
0.01 2e+0 34 rbaal4a21_at rbaal4a21 - - 2e-2 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.01 2e+0 34 Contig21355_at Contig21355 - - 8e-2 At1g53710 hydrolase/ protein serine/threonine phosphatase C.G. S.X.
0.01 2e+0 34 Contig8506_at Contig8506 - - 5e-13 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) C.G. S.X.
0.01 2e+0 34 Contig4218_at Contig4218 - - 1e-19 At1g26270 phosphatidylinositol 3- and 4-kinase family protein C.G. S.X.
0.01 6e+0 32 EBes01_SQ003_E20_at EBes01_SQ003_E20 - - 8e-1 At3g58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-17 91 Arabidopsis thaliana At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. - - - C.G. S.X.
0.04 3e-7 57 Glycine max GmaAffx.30344.1.S1_at AW349341 - - 5e-6 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.40 0 797 Oryza sativa Os09g0308900 AK121946.1 - Phosphoesterase, PA-phosphatase related familyprotein 3e-6 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.10 3e-16 87 Populus trichocarpa PtpAffx.21027.1.A1_at BP931070 hypothetical protein - 1e-7 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.82 0 2028 Triticum aestivum Ta.3559.1.S1_at BE213357 - - 3e-9 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.03 1e-3 44 Vitis vinifera 1621834_at BQ794561 hypothetical protein LOC100254175 - 2e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.36 2e-42 173 Zea mays Zm.8204.1.A1_at BM073273 hypothetical protein LOC100193193 - 5e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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