Gene omics information

Query gene ID	Contig8552_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig8552_at	Contig8552	-	-	2e+0	At4g15830	binding	S.X.	H.G.	Please select
0.63	80.3	Contig5447_at	Contig5447	-	-	4e-62	At5g10840	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.50	66.9	Contig22314_at	Contig22314	-	-	5e+0	At3g26770	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig12674_at	Contig12674	-	-	4e-1	At5g57850	aminotransferase class IV family protein	S.X.	H.G.	Please select
0.36	47.1	Contig5744_at	Contig5744	-	-	1e-7	At2g40600	appr-1-p processing enzyme family protein	S.X.	H.G.	Please select
0.36	47.1	Contig1751_x_at	Contig1751	-	-	1e-1	At1g15270	-	S.X.	H.G.	Please select
0.24	27.2	Contig7136_at	Contig7136	-	-	3e-7	At3g22420	WNK2 (WITH NO K 2)	S.X.	H.G.	Please select
0.10	8.4	Contig5533_at	Contig5533	-	-	2e-7	At4g33070	pyruvate decarboxylase, putative	S.X.	H.G.	Please select
0.07	5.8	Contig2916_at	Contig2916	UDP-D-glucuronate decarboxylase	-	1e-33	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.6	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.9	99.6	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.6	99.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.2	99.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.8	99.5	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.8	99.4	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.7	99.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.0	99.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
10.8	99.2	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.5	99.2	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-6	54	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e-6	54	Contig5238_at	Contig5238	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	C.G.	S.X.	Please select
0.03	4e-6	52	Contig17054_at	Contig17054	-	-	8e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	C.G.	S.X.	Please select
0.03	2e-5	50	Contig5708_at	Contig5708	-	-	1e+0	At2g47280	pectinesterase	C.G.	S.X.	Please select
0.03	2e-4	46	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	C.G.	S.X.	Please select
0.04	2e-4	46	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.02	2e-4	46	Contig3421_at	Contig3421	-	-	7e-69	At2g23080	casein kinase II alpha chain, putative	C.G.	S.X.	Please select
0.03	1e-3	44	Contig10310_at	Contig10310	-	-	8e-3	At1g75690	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.02	1e-3	44	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g15830	827264	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	GmaAffx.12286.2.S1_at	BM108265	-	-	1e-11	At5g38510	rhomboid family protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	OsAffx.11363.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.99689.1.S1_at	DN484603	-	-	3e-1	At1g70970	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	3e-27	123	Triticum aestivum	TaAffx.12568.1.S1_at	BJ253952	-	-	8e+0	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	C.G.	S.X.	Please select
0.03	6e-4	44	Vitis vinifera	1618174_at	CB001667	-	-	9e-2	At3g59730	receptor lectin kinase, putative	C.G.	S.X.	Please select
0.03	3e-3	42	Zea mays	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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