CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8523_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig8523_s_at Contig8523 - - 9e-13 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) S.X. H.G.
0.67 84.7 HVSMEg0008O07r2_at HVSMEg0008O07r2 - - 3e-1 At1g72970 HTH (HOTHEAD) S.X. H.G.
0.57 74.9 Contig8522_at Contig8522 - - 2e-3 At5g27730 unknown protein S.X. H.G.
0.37 47.9 Contig25029_at Contig25029 - - 4e+0 At3g48231 LCR48 (Low-molecular-weight cysteine-rich 48) S.X. H.G.
0.29 35.5 Contig22141_at Contig22141 - - 3e+0 At3g07440 unknown protein S.X. H.G.
0.21 22.6 HVSMEc0010O09r2_at HVSMEc0010O09r2 - - 1e+0 At5g28630 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 99.6 GSM261052 Bonus Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9 99.4 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9 99.4 GSM261051 Bonus Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5 99.2 GSM310867 lina_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.3 98.8 GSM261050 Bonus Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7 98.3 GSM372974 genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.7 98.3 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.6 98.2 GSM310863 lina_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.4 98.1 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.4 97.5 GSM310864 lina_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 7e-126 450 HO14E13S_at HO14E13S - - 7e-1 At1g27250 paired amphipathic helix repeat-containing protein C.G. S.X.
0.34 2e-89 329 Contig14249_at Contig14249 - - 4e-1 At1g52940 PAP5 (PURPLE ACID PHOSPHATASE 5) C.G. S.X.
0.28 2e-86 319 Contig8526_at Contig8526 - - 5e-1 At5g14430 dehydration-responsive protein-related C.G. S.X.
0.28 2e-86 319 Contig8526_s_at Contig8526 - - 5e-1 At5g14430 dehydration-responsive protein-related C.G. S.X.
0.09 1e-13 77 Contig18975_at Contig18975 - - 4e-1 At2g45130 SPX3 (SPX DOMAIN GENE 3) C.G. S.X.
0.01 1e-1 38 Contig9618_s_at Contig9618 - - 1e-5 At5g34850 PAP26 (PURPLE ACID PHOSPHATASE 26) C.G. S.X.
0.02 1e-1 38 Contig11481_at Contig11481 - - 1e+0 At2g26670 TED4 (REVERSAL OF THE DET PHENOTYPE 4) C.G. S.X.
0.01 1e-1 38 Contig8249_at Contig8249 - - 2e-4 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.02 1e-1 38 Contig8058_at Contig8058 - - 5e+0 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-13 75 Arabidopsis thaliana At3g52820 824448 PAP22 (PURPLE ACID PHOSPHATASE 22) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA - - - C.G. S.X.
0.03 2e-5 52 Glycine max PsAffx.C46000071_at PsAffx.C46000071 - - 3e+0 At2g16430 PAP10 (PURPLE ACID PHOSPHATASE 10) C.G. S.X.
0.50 2e-117 424 Oryza sativa Os11g0151700 AK073222.1 - Purple acid phosphatase 2e-5 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) C.G. S.X.
0.06 3e-1 38 Populus trichocarpa PtpAffx.221491.1.S1_at pmrna38397 hypothetical protein - 2e-7 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) C.G. S.X.
0.54 6e-125 448 Triticum aestivum Ta.12436.1.S1_at BQ172333 - - 2e-3 At3g52810 PAP21 (PURPLE ACID PHOSPHATASE 21) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617737_at CF204972.1 hypothetical protein LOC100258020 - 1e-3 At3g01490 protein kinase, putative C.G. S.X.
0.07 5e-3 42 Zea mays Zm.7517.1.A1_at BM078773 hypothetical protein LOC100217133 - 2e-5 At4g36350 PAP25 (PURPLE ACID PHOSPHATASE 25) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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