Gene omics information

Query gene ID	Contig8505_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	S.X.	H.G.	Please select
0.83	94.0	Contig4111_at	Contig4111	-	-	6e-1	At1g49010	myb family transcription factor	S.X.	H.G.	Please select
0.43	56.4	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	S.X.	H.G.	Please select
0.43	56.4	HS07H05u_s_at	HS07H05u	-	-	1e-6	At2g29080	ftsh3 (FtsH protease 3)	S.X.	H.G.	Please select
0.43	56.4	rbah11g06_s_at	rbah11g06	-	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	S.X.	H.G.	Please select
0.29	35.5	Contig7267_at	Contig7267	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	99.2	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.0	98.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	38	Contig14717_at	Contig14717	-	-	5e-4	At5g42920	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	C.G.	S.X.	Please select
0.03	2e-1	36	S0001000056H16F1_at	S0001000056H16F1	-	-	9e-1	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12427_at	Contig12427	-	-	5e-1	At1g12140	FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig22113_at	Contig22113	-	-	5e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig15376_at	Contig15376	-	-	3e+0	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9924_at	Contig9924	-	-	2e-1	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig650_at	Contig650	-	-	5e-34	At2g37600	60S ribosomal protein L36 (RPL36A)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12060_at	Contig12060	-	-	3e-16	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e+0	34	Arabidopsis thaliana	At5g18280	831946	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	5e-5	50	Glycine max	Gma.10625.1.S1_at	CD415285	-	-	9e-3	At3g04080	ATAPY1 (APYRASE 1)	C.G.	S.X.	Please select
0.39	3e-130	466	Oryza sativa	Os07g0682800	AK066262.1	-	Apyrase	7e-11	At3g04080	ATAPY1 (APYRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	8e-7	56	Populus trichocarpa	PtpAffx.4614.2.A1_at	CV256573	hypothetical protein	-	2e-22	At3g04080	ATAPY1 (APYRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	1421	Triticum aestivum	Ta.9208.1.S1_at	CA679957	-	-	3e-4	At3g04080	ATAPY1 (APYRASE 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1616726_at	BQ793969	hypothetical protein LOC100255605	-	8e-11	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	C.G.	S.X.	Please select
0.40	2e-75	282	Zea mays	Zm.3706.1.S1_at	CO526030	hypothetical protein LOC100272244	-	2e-1	At3g04080	ATAPY1 (APYRASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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