Gene omics information

Query gene ID	Contig8498_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.35	45.1	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	S.X.	H.G.	Please select
0.91	98.1	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	S.X.	H.G.	Please select
0.91	98.1	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.80	92.5	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select
0.47	62.2	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	98.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
6.0	97.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
4.5	96.7	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.2	96.3	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.2	94.3	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	Contig17168_at	Contig17168	-	-	1e+0	At4g27250	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	C.G.	S.X.	Please select
0.01	4e-1	36	Contig17205_at	Contig17205	-	-	1e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig26501_at	Contig26501	-	-	3e-1	At1g51000	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig19436_at	Contig19436	-	-	1e-3	At1g59720	CRR28 (CHLORORESPIRATORY REDUCTION28)	C.G.	S.X.	Please select
0.02	2e+0	34	Contig12216_at	Contig12216	-	-	6e+0	At4g39130	dehydrin family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10644_at	Contig10644	-	-	5e-79	At4g00660	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig91_at	Contig91	-	-	2e-67	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.02	6e+0	32	HW09A20u_at	HW09A20u	-	-	3e+0	At1g30910	molybdenum cofactor sulfurase family protein	C.G.	S.X.	Please select
0.02	6e+0	32	EBro02_SQ004_H15_at	EBro02_SQ004_H15	-	-	5e+0	At4g39130	dehydrin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	6e-8	59	Arabidopsis thaliana	At4g36390	829791	radical SAM domain-containing protein / TRAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e+0	34	Glycine max	HgAffx.21841.1.S1_at	BI451717	-	-	4e+0	At5g10950	cylicin-related	C.G.	S.X.	Please select
0.51	0	807	Oryza sativa	Os11g0592800	AK066319.1	-	CDK5RAP1-like protein	5e-15	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	7e-27	123	Populus trichocarpa	PtpAffx.207388.1.S1_at	pmrna14660	hypothetical protein	-	7e-35	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	0	817	Triticum aestivum	TaAffx.31365.1.S1_s_at	CA617063	-	-	3e-13	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please select
0.15	3e-25	115	Vitis vinifera	1621513_at	CB001476	-	-	8e-39	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zea mays	Zm.16788.1.A1_at	BQ538999	hypothetical protein LOC100193736	-	1e-3	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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