Gene omics information

Query gene ID	Contig8475_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	S.X.	H.G.	Please select
0.50	66.9	Contig8266_at	Contig8266	-	-	2e+0	At1g44318	hemb2	S.X.	H.G.	Please select
0.50	66.9	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	S.X.	H.G.	Please select
0.43	56.4	Contig1193_s_at	Contig1193	-	-	2e-2	At1g01520	myb family transcription factor	S.X.	H.G.	Please select
0.43	56.4	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.38	49.5	Contig6023_s_at	Contig6023	-	-	3e-12	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.35	45.1	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig10218_at	Contig10218	-	-	2e+0	At2g44820	unknown protein	S.X.	H.G.	Please select
0.24	27.2	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	S.X.	H.G.	Please select
0.21	22.6	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM363468	10 mM B(OH)3 treatment (10B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.4	94.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.3	94.6	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-7	57	Contig12064_at	Contig12064	-	-	6e-1	At4g31020	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3096_s_at	Contig3096	-	-	3e+0	At3g17170	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	C.G.	S.X.	Please select
0.02	2e+0	34	Contig18073_at	Contig18073	-	-	7e-2	At5g47080	CKB1	C.G.	S.X.	Please select
0.02	2e+0	34	Contig20140_at	Contig20140	-	-	2e-1	At5g12310	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig15020_at	Contig15020	-	-	2e+0	At5g33210	SRS8 (SHI-RELATED SEQUENCE 8)	C.G.	S.X.	Please select
0.02	2e+0	34	Contig11007_at	Contig11007	-	-	4e+0	Atmg00980	-	C.G.	S.X.	Please select
0.01	6e+0	32	Contig5147_at	Contig5147	-	-	1e-1	At4g33210	F-box family protein (FBL15)	C.G.	S.X.	Please select
0.01	6e+0	32	Contig3097_at	Contig3097	-	-	4e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At3g15670	820810	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-7	57	Glycine max	GmaAffx.4082.2.S1_at	BG156874	-	-	2e+0	At5g44973	-	C.G.	S.X.	Please select
0.58	0	1011	Oryza sativa	Os09g0394900	AK061821.1	-	Annexin-like protein	3e+0	At5g23640	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-2	42	Populus trichocarpa	PtpAffx.125337.1.S1_at	BU877934	hypothetical protein	-	3e-17	At1g50910	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1269	Triticum aestivum	Ta.13966.1.S1_at	CA606157	-	-	7e-1	At1g28550	AtRABA1i (Arabidopsis Rab GTPase homolog A1i)	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1616211_at	CF415232	hypothetical protein LOC100250444	-	8e-1	At3g27630	unknown protein	C.G.	S.X.	Please select
0.52	0	747	Zea mays	Zm.13766.1.S1_at	CF630318	annexin A4	-	8e-1	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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