Gene omics information

Query gene ID	Contig8468_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	S.X.	H.G.	Please select
0.80	92.5	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	S.X.	H.G.	Please select
0.73	88.7	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	S.X.	H.G.	Please select
0.53	69.7	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	S.X.	H.G.	Please select
0.47	62.2	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.1	99.6	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.7	99.5	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.1	99.5	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.5	99.5	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM372994	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.6	99.2	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.2	99.1	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.0	98.9	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.9	98.9	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-3	44	Contig11292_at	Contig11292	-	-	3e-2	At5g57310	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5731_at	Contig5731	-	-	5e-4	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7693_at	Contig7693	-	-	1e-7	At4g16765	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14226_at	Contig14226	-	-	2e-7	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig13712_at	Contig13712	-	-	2e+0	At4g08869	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2814_at	Contig2814	-	-	1e-14	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig25733_at	Contig25733	-	-	1e+0	At1g10140	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14226_s_at	Contig14226	-	-	2e-7	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13148_at	Contig13148	-	-	2e+0	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-12	75	Arabidopsis thaliana	At4g33050	829442	EDA39 (embryo sac development arrest 39)	F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-3	46	Glycine max	GmaAffx.93318.1.S1_s_at	CF807657	-	-	8e-12	At2g26190	calmodulin-binding family protein	C.G.	S.X.	Please select
0.32	9e-67	256	Oryza sativa	Os01g0570800	AK099914.1	-	IQ calmodulin-binding region domain containingprotein	8e-14	At4g33050	EDA39 (embryo sac development arrest 39)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-12	75	Populus trichocarpa	PtpAffx.206380.1.S1_at	pmrna12672	hypothetical protein	-	2e-13	At5g57010	calmodulin-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	0	1511	Triticum aestivum	Ta.24422.1.S1_x_at	BJ320530	-	-	4e-17	At1g54080	oligouridylate-binding protein, putative	C.G.	S.X.	Please select
0.13	3e-22	105	Vitis vinifera	1620562_at	CB343617	hypothetical protein LOC100250890	-	3e-20	At4g33050	EDA39 (embryo sac development arrest 39)	C.G.	S.X.	Please select
0.03	1e-7	57	Zea mays	ZmAffx.858.1.S1_at	AI770694	hypothetical protein LOC100279877	-	8e-1	At1g11850	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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