Gene omics information

Query gene ID	Contig8444_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	94.8	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	S.X.	H.G.	Please select
0.63	80.3	Contig19064_at	Contig19064	-	-	3e+0	At4g09460	ATMYB6	S.X.	H.G.	Please select
0.56	74.3	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	S.X.	H.G.	Please select
0.50	66.9	HVSMEk0023O04r2_at	HVSMEk0023O04r2	-	-	8e-2	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	S.X.	H.G.	Please select
0.47	62.2	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select
0.35	45.1	Contig18794_at	Contig18794	-	-	8e+0	At3g54940	-	S.X.	H.G.	Please select
0.30	37.0	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7	99.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
6.9	98.3	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
6.7	98.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
6.3	98.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-6	52	Contig11724_at	Contig11724	-	-	8e-11	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig4996_at	Contig4996	-	-	7e-3	At3g22750	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig4999_at	Contig4999	-	-	6e-3	At3g22750	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig4997_s_at	Contig4997	-	-	3e-2	At3g24540	protein kinase family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig18914_at	Contig18914	-	-	3e-2	At3g02810	protein kinase family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12625_at	Contig12625	-	-	5e-11	At1g09440	protein kinase family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8403_at	Contig8403	-	-	3e-1	At2g45120	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-6	54	Arabidopsis thaliana	At2g28250	817371	NCRK	F:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	38	Glycine max	GmaAffx.86611.1.S1_at	BI316735	-	-	2e-34	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.23	2e-36	155	Oryza sativa	Os03g0283900	AK105569.1	-	-	6e-2	At1g07870	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-3	46	Populus trichocarpa	PtpAffx.219736.1.S1_at	pmrna35756	hypothetical protein	-	5e-45	At5g02800	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-2	40	Triticum aestivum	TaAffx.118856.1.S1_at	BU099684	-	-	2e-18	At5g18610	protein kinase family protein	C.G.	S.X.	Please select
0.08	1e-5	50	Vitis vinifera	1619555_at	AY395743.1	hypothetical protein LOC100250154	-	3e-61	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Zea mays	Zm.4107.1.A1_at	AI739783	hypothetical protein LOC100273161	-	2e-22	At3g58690	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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