Gene omics information

Query gene ID	Contig841_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	S.X.	H.G.	Please select
0.73	88.7	Contig11673_at	Contig11673	-	-	7e-8	At2g35720	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.73	88.7	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select
0.55	72.0	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	S.X.	H.G.	Please select
0.50	66.9	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.47	62.2	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.3	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4	99.2	GSM261023	ABA-Control-rep3	GSE10328	ABA experiment
10.0	99.1	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.6	99.0	GSM261050	Bonus Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
9.3	99.0	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
7.7	98.6	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
7.4	98.5	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1572	Contig837_x_at	Contig837	-	-	1e-26	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.94	0	1566	Contig628_x_at	Contig628	-	-	4e-32	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.68	0	1505	Contig6_x_at	Contig6	-	-	1e-33	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.90	0	1376	Contig433_x_at	Contig433	-	-	3e-17	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.77	0	997	Contig949_at	Contig949	-	-	8e-28	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.75	0	789	Contig926_x_at	Contig926	-	-	1e-44	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.77	0	749	Contig432_x_at	Contig432	-	-	1e-29	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.49	0	741	Contig944_at	Contig944	-	-	1e-18	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.65	0	734	Contig422_at	Contig422	-	-	8e-25	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	1e-35	151	Arabidopsis thaliana	At2g34420	818005	LHB1B2	Photosystem II type I chlorophyll a/b-binding protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.52	7e-75	282	Glycine max	Gma.10882.1.S1_s_at	U39475.1	chlorophyll a/b-binding protein	-	2e-50	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.53	2e-149	529	Oryza sativa	Os01g0600900	AK119173.1	-	Chlorophyll a-b binding protein 2, chloroplastprecursor (LHCII type I CAB-2) (LHCP)	4e-42	At2g34420	LHB1B2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	2e-75	284	Populus trichocarpa	Ptp.1584.3.S1_x_at	CV276941	light-harvesting complex II protein Lhcb1	-	1e-51	At1g29920	CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	1211	Triticum aestivum	Ta.3795.1.S1_x_at	U73218.1	chlorophyll a/b-binding protein WCAB precursor	-	1e-26	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.54	6e-81	299	Vitis vinifera	1618116_s_at	BQ798823	hypothetical protein LOC100252004 /// hypothetical protein LOC100241745	-	2e-71	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.58	1e-160	565	Zea mays	Zm.15442.1.A1_at	BM379425	Light-harvesting chlorophyll a/b binding protein	-	9e-37	At2g34420	LHB1B2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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