Gene omics information

Query gene ID	Contig8358_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig8358_at	Contig8358	-	-	1e-1	At3g25400	-	S.X.	H.G.	Please select
0.55	72.0	Contig72_s_at	Contig72	-	-	5e-3	At1g54220	dihydrolipoamide S-acetyltransferase, putative	S.X.	H.G.	Please select
0.19	19.6	HY07I17u_at	HY07I17u	-	-	8e-1	At1g67865	unknown protein	S.X.	H.G.	Please select
0.17	16.9	Contig3331_at	Contig3331	-	-	4e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.08	6.5	Contig7637_at	Contig7637	-	-	3e-20	At3g07700	ABC1 family protein	S.X.	H.G.	Please select
0.07	5.8	Contig2621_at	Contig2621	-	-	1e-18	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-49	196	HB09I22w_at	HB09I22w	-	-	3e-1	At5g17390	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	7e-2	38	Contig6182_at	Contig6182	-	-	5e-5	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	7e-2	38	HVSMEb0008G01r2_at	HVSMEb0008G01r2	-	-	5e-1	At4g18170	WRKY28	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3632_s_at	Contig3632	-	-	3e-17	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig26236_at	Contig26236	-	-	1e-6	At1g76820	GTP binding / GTPase	C.G.	S.X.	Please select
0.03	1e+0	34	HVSMEl0024B11r2_at	HVSMEl0024B11r2	-	-	4e-1	At2g41230	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16812_at	Contig16812	-	-	3e+0	At4g23770	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14625_at	Contig14625	-	-	2e-2	At3g06020	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g25400	822124	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	GmaAffx.3027.3.S1_at	BQ094554	-	-	6e-1	At1g22210	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please select
0.39	1e-80	301	Oryza sativa	Os01g0559200	AK102611.1	-	Hypothetical protein	4e-2	At2g46140	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-2	42	Populus trichocarpa	PtpAffx.214053.1.S1_at	pmrna27357	hypothetical protein	-	1e-8	At3g20430	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	0	1231	Triticum aestivum	Ta.6164.1.S1_at	BJ215034	-	-	1e-1	At3g25400	-	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1613439_s_at	CF074637	-	-	2e-1	At5g16030	unknown protein	C.G.	S.X.	Please select
0.33	1e-39	163	Zea mays	ZmAffx.1162.1.S1_at	AW447878	hypothetical protein LOC100278489	-	2e-1	At4g34920	1-phosphatidylinositol phosphodiesterase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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