Gene omics information

Query gene ID	Contig8340_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.73	88.7	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	S.X.	H.G.	Please select
0.67	84.7	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	S.X.	H.G.	Please select
0.60	77.3	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	S.X.	H.G.	Please select
0.57	74.9	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select
0.56	74.3	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
25.4	99.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
20.2	99.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.3	99.6	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
16.1	99.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
13.8	99.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.9	99.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.8	99.4	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
12.5	99.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.5	99.4	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Contig2736_s_at	Contig2736	-	-	3e-4	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18853_at	Contig18853	-	-	6e-2	At3g47920	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig23156_at	Contig23156	-	-	4e+0	At5g14100	ATNAP14	C.G.	S.X.	Please select
0.02	4e+0	32	Contig18356_at	Contig18356	-	-	4e-4	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig14162_s_at	Contig14162	-	-	2e-14	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig6967_at	Contig6967	-	-	2e-1	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig15336_at	Contig15336	-	-	3e-2	At5g01850	protein kinase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Contig14162_at	Contig14162	-	-	2e-14	At4g36400	FAD linked oxidase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig7197_at	Contig7197	-	-	5e-15	At3g45810	ferric reductase-like transmembrane component family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-3	42	Arabidopsis thaliana	At2g41190	818718	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.47461.1.S1_at	AI938349	-	-	1e-10	At3g60810	unknown protein	C.G.	S.X.	Please select
0.49	3e-152	539	Oryza sativa	Os02g0788800	AK060825.1	-	Amino acid/polyamine transporter II family protein	1e-5	At2g41190	amino acid transporter family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-1	38	Populus trichocarpa	PtpAffx.127443.1.A1_at	CV255091	-	-	5e-10	At2g41190	amino acid transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	0	642	Triticum aestivum	Ta.26177.2.S1_a_at	CA598562	-	-	2e-2	At2g41190	amino acid transporter family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Vitis vinifera	1610562_at	CF514967	hypothetical protein LOC100249618	-	4e-32	At2g39130	amino acid transporter family protein	C.G.	S.X.	Please select
0.45	7e-94	343	Zea mays	Zm.10826.1.S1_at	BQ619411	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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