Gene omics information

Query gene ID	Contig8332_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig8332_at	Contig8332	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select
0.46	61.0	HV_CEa0010M13r2_s_at	HV_CEa0010M13r2	-	-	9e-1	At4g01670	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig19284_at	Contig19284	-	-	2e-20	At1g48410	AGO1 (ARGONAUTE 1)	S.X.	H.G.	Please select
0.43	56.4	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.43	56.4	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	S.X.	H.G.	Please select
0.32	40.3	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.3	94.6	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	S0001000056H02F1_at	S0001000056H02F1	-	-	2e-1	At2g42530	COR15B (COLD REGULATED 15B)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig14569_at	Contig14569	-	-	3e-7	At3g13560	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig6420_at	Contig6420	-	-	5e-5	At3g61140	FUS6 (FUSCA 6)	C.G.	S.X.	Please select
0.01	2e+0	34	rbaal13j08_at	rbaal13j08	-	-	1e+0	At3g57110	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig12770_at	Contig12770	-	-	2e-4	At3g17410	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11521_at	Contig11521	-	-	3e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig21089_at	Contig21089	-	-	1e+0	At2g05310	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	EBro08_SQ009_O22_at	EBro08_SQ009_O22	-	-	7e-1	At4g38410	dehydrin, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig19689_at	Contig19689	-	-	4e+0	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-8	61	Arabidopsis thaliana	At5g13020	831142	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.4995.2.S1_at	AW830184	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.40	5e-115	416	Oryza sativa	Os.38313.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-12	73	Populus trichocarpa	PtpAffx.200070.1.S1_x_at	pmrna128	hypothetical protein	-	8e-28	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.92	0	2639	Triticum aestivum	Ta.4983.1.S1_at	BQ169533	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1614103_at	CF515571	hypothetical protein LOC100257061	-	2e-2	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.32	9e-64	244	Zea mays	Zm.5644.1.S1_at	AY108155.1	hypothetical protein LOC100276211	-	1e-8	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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