Gene omics information

Query gene ID	Contig8299_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	S.X.	H.G.	Please select
0.61	78.7	Contig15070_at	Contig15070	-	-	1e-2	At4g10810	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig4647_s_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.53	69.7	Contig16867_at	Contig16867	-	-	7e-9	At3g02690	integral membrane family protein	S.X.	H.G.	Please select
0.46	61.0	Contig8629_at	Contig8629	-	-	3e-6	At2g17190	ubiquitin family protein	S.X.	H.G.	Please select
0.43	56.4	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.33	42.6	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.26	30.4	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.3	97.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1193	Contig8298_at	Contig8298	-	-	3e-18	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig13109_s_at	Contig13109	-	-	3e+0	At5g18880	-	C.G.	S.X.	Please select
0.02	2e-2	40	Contig13109_at	Contig13109	-	-	3e+0	At5g18880	-	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10657_at	Contig10657	-	-	2e+0	At4g33310	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14990_at	Contig14990	isoamylase	-	8e-25	At4g09020	ISA3 (ISOAMYLASE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3807_at	Contig3807	-	-	7e-9	At4g22220	ISU1	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9354_at	Contig9354	-	-	3e-5	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	C.G.	S.X.	Please select
0.02	1e+0	34	EBpi01_SQ001_D04_at	EBpi01_SQ001_D04	-	-	5e-1	At2g16620	protein kinase-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8025_at	Contig8025	-	-	2e-44	At1g32380	ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	3e-9	63	Arabidopsis thaliana	At3g20650	821612	mRNA capping enzyme family protein	F:catalytic activity;P:mRNA capping;C:chloroplast;OVMFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-11	71	Glycine max	Gma.11177.1.S1_at	BU084326	-	-	3e-30	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.68	0	932	Oryza sativa	Os08g0180000	AK103587.1	-	contains InterPro domain(s): IPR004971	9e-19	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-11	71	Populus trichocarpa	Ptp.5664.1.S1_at	CV258879	hypothetical protein	-	4e-30	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	862	Triticum aestivum	Ta.10112.1.S1_at	CD884721	-	-	4e-12	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.15	9e-7	54	Vitis vinifera	1612937_at	BQ796823	hypothetical protein LOC100243615	-	8e-11	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.28	8e-82	303	Zea mays	Zm.7544.1.A1_at	BM334017	mRNA	-	3e-2	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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