Gene omics information

Query gene ID	Contig8297_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig8297_at	Contig8297	-	-	2e-24	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	S.X.	H.G.	Please select
0.50	66.9	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig16048_at	Contig16048	-	-	8e-1	At1g24880	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	S.X.	H.G.	Please select
0.29	35.5	Contig9524_at	Contig9524	-	-	2e+0	At1g31400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.29	35.5	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.18	18.2	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.5	98.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.1	98.0	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	36	Contig9777_at	Contig9777	-	-	2e-8	At3g22990	LFR (LEAF AND FLOWER RELATED)	C.G.	S.X.	Please select
0.01	6e-1	36	Contig18418_s_at	Contig18418	-	-	1e+0	At4g19350	EMB3006 (embryo defective 3006)	C.G.	S.X.	Please select
0.01	6e-1	36	Contig18418_at	Contig18418	-	-	1e+0	At4g19350	EMB3006 (embryo defective 3006)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8218_at	Contig8218	-	-	6e-4	At1g28120	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6571_at	Contig6571	-	-	6e-10	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig15645_at	Contig15645	-	-	2e+0	At1g05300	ZIP5	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2458_at	Contig2458	-	-	1e-20	At3g27090	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig23265_at	Contig23265	-	-	5e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16107_at	Contig16107	-	-	2e+0	At3g09980	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-24	115	Arabidopsis thaliana	At1g79690	844308	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	F:hydrolase activity;P:unknown;C:cytosol, vacuole;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	8e-15	83	Glycine max	GmaAffx.27367.1.S1_at	BG653618	-	-	7e-9	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please select
0.69	0	2000	Oryza sativa	Os02g0793300	AK072317.1	-	Isopentenyl-diphosphate delta-isomerase familyprotein	2e-21	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	6e-25	117	Populus trichocarpa	PtpAffx.5195.1.S1_at	CV262828	-	-	4e-34	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	0	749	Triticum aestivum	TaAffx.7306.1.S1_at	CA604087	-	-	7e-3	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please select
0.01	4e-1	36	Vitis vinifera	1608891_at	CF201205.1	-	-	3e-72	At4g40040	histone H3.2	C.G.	S.X.	Please select
0.01	5e-1	36	Zea mays	Zm.15954.1.A1_at	CK371273	hypothetical protein LOC100273974	-	4e-1	At1g71440	PFI (PFIFFERLING)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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