Gene omics information

Query gene ID	Contig8242_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig8242_at	Contig8242	-	-	1e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	S.X.	H.G.	Please select
0.83	94.0	Contig8243_at	Contig8243	-	-	3e+0	At3g47670	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	S.X.	H.G.	Please select
0.60	77.3	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	S.X.	H.G.	Please select
0.59	75.8	Contig8333_at	Contig8333	-	-	4e-2	At3g56510	TBP-binding protein, putative	S.X.	H.G.	Please select
0.56	74.3	Contig5509_at	Contig5509	-	-	4e-15	At5g47540	binding	S.X.	H.G.	Please select
0.50	66.9	Contig5897_at	Contig5897	-	-	6e-1	At5g27810	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.8	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	38	Contig6986_at	Contig6986	-	-	1e-3	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11529_at	Contig11529	-	-	3e-3	At4g17770	ATTPS5	C.G.	S.X.	Please select
0.01	2e-1	36	Contig10008_at	Contig10008	-	-	4e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8411_at	Contig8411	-	-	2e-1	At3g58630	transcription factor	C.G.	S.X.	Please select
0.03	7e-1	34	Contig20647_at	Contig20647	-	-	2e+1	At5g03995	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	HS16K24u_at	HS16K24u	-	-	1e+0	At5g03550	-	C.G.	S.X.	Please select
0.02	7e-1	34	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	7e-1	34	Contig15121_at	Contig15121	-	-	4e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.01	7e-1	34	Contig7309_at	Contig7309	-	-	3e-10	At4g36195	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g11620	831034	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	PsAffx.C208000001_at	PsAffx.C208000001	-	-	1e+0	At2g35640	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.17	1e-33	145	Oryza sativa	Os03g0626200	9631.m04121	-	Hypothetical protein	3e-1	At5g23480	DNA binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.24179.2.S1_at	CV258323	hypothetical protein	-	2e-8	At1g49410	TOM6 (translocase of the outer mitochondrial membrane 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	4e-72	272	Triticum aestivum	Ta.28203.2.S1_s_at	CA650863	-	-	1e+0	At1g04640	LIP2 (LIPOYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1612753_at	CF205714.1	hypothetical protein LOC100260428	-	3e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	C.G.	S.X.	Please select
0.12	4e-14	77	Zea mays	Zm.6145.1.A1_at	CA828167	hypothetical protein LOC100192814	-	5e+0	At5g27210	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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