CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8220_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig8220_at Contig8220 - - 6e-1 At1g33040 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) S.X. H.G.
0.67 84.7 Contig7984_s_at Contig7984 - - 3e-1 At5g65640 bHLH093 (beta HLH protein 93) S.X. H.G.
0.60 77.3 Contig6751_at Contig6751 - - 1e+0 At3g04990 - S.X. H.G.
0.55 72.0 Contig5893_at Contig5893 - - 1e-52 At1g04170 EIF2 GAMMA S.X. H.G.
0.43 56.4 HVSMEi0002I06r2_x_at HVSMEi0002I06r2 - - 3e+0 At3g02220 unknown protein S.X. H.G.
0.40 53.1 Contig18044_at Contig18044 - - 1e+0 At3g47070 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.8 99.9 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
44.0 99.9 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
29.5 99.9 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
27.1 99.8 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
19.2 99.7 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.8 99.7 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.7 99.7 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
15.3 99.6 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.8 99.4 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.1 99.3 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 8e-82 303 HVSMEl0005A12r2_at HVSMEl0005A12r2 - - 1e+1 At3g43833 unknown protein C.G. S.X.
0.02 1e-6 54 Contig12512_at Contig12512 - - 4e-20 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 1e-6 54 Contig8374_at Contig8374 - - 5e-1 At5g62900 unknown protein C.G. S.X.
0.03 5e-6 52 Contig4747_at Contig4747 - - 2e+0 At2g05620 PGR5 (proton gradient regulation 5) C.G. S.X.
0.03 5e-6 52 Contig4072_at Contig4072 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) C.G. S.X.
0.02 5e-6 52 Contig26537_at Contig26537 - - 8e+0 At5g47435 formyltetrahydrofolate deformylase, putative C.G. S.X.
0.02 5e-6 52 Contig9573_at Contig9573 - - 4e-9 At1g43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative C.G. S.X.
0.02 5e-6 52 Contig7910_at Contig7910 - - 2e+0 At3g25070 RIN4 (RPM1 INTERACTING PROTEIN 4) C.G. S.X.
0.03 2e-5 50 Contig11166_s_at Contig11166 - - 8e-2 At1g65000 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At1g33040 840199 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA - - - C.G. S.X.
0.03 5e-2 40 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.31 1e-34 149 Oryza sativa Os07g0561300 AK072982.1 - Cyclin-like F-box domain containing protein 6e-1 At2g29125 RTFL2 (ROTUNDIFOLIA LIKE 2) C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.205728.1.S1_at pmrna11303 hypothetical protein - 6e-1 At5g62210 embryo-specific protein-related C.G. S.X.
0.84 0 1245 Triticum aestivum Ta.7015.1.S1_at BQ482787 - - 1e+1 At5g48680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.03 4e-3 42 Zea mays Zm.6913.2.A1_a_at AI065646 - - 9e-1 At2g16060 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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