CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8209_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig8209_at Contig8209 - - 1e+0 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) S.X. H.G.
0.49 63.7 Contig13114_at Contig13114 - - 1e+0 At1g14450 unknown protein S.X. H.G.
0.44 58.9 Contig9715_s_at Contig9715 - - 8e+0 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) S.X. H.G.
0.37 47.9 Contig6569_at Contig6569 - - 1e-56 At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative S.X. H.G.
0.36 47.1 Contig9518_at Contig9518 - - 5e+0 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) S.X. H.G.
0.32 40.3 Contig3848_at Contig3848 - - 7e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) S.X. H.G.
0.28 35.5 Contig19804_at Contig19804 - - 2e+0 At3g54040 photoassimilate-responsive protein-related S.X. H.G.
0.28 35.5 Contig7831_at Contig7831 - - 6e-23 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) S.X. H.G.
0.27 32.1 Contig7155_at Contig7155 - - 3e-1 At1g65520 ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1) S.X. H.G.
0.25 28.9 rbags22i06_at rbags22i06 - - 1e-3 At2g23140 binding / ubiquitin-protein ligase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.7 99.4 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.2 98.7 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
7.7 98.6 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.1 98.4 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.5 98.2 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.5 98.2 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
6.1 98.0 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.9 97.9 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.7 97.7 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
5.2 97.4 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 7e-130 464 HVSMEi0021C18r2_s_at HVSMEi0021C18r2 - - 2e+0 At4g03140 binding / catalytic/ oxidoreductase C.G. S.X.
0.01 1e-1 38 Contig592_at Contig592 - - 2e-4 At1g11860 aminomethyltransferase, putative C.G. S.X.
0.01 6e-1 36 Contig11615_s_at Contig11615 - - 2e+0 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.01 6e-1 36 Contig3791_s_at Contig3791 - - 1e-8 At5g66530 aldose 1-epimerase family protein C.G. S.X.
0.01 6e-1 36 Contig11615_at Contig11615 - - 2e+0 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.01 6e-1 36 Contig1071_s_at Contig1071 - - 5e-3 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 6e-1 36 Contig10615_at Contig10615 - - 2e+0 At5g60840 unknown protein C.G. S.X.
0.01 6e-1 36 Contig12959_at Contig12959 - - 4e-3 At1g31650 ROPGEF14 C.G. S.X.
0.01 6e-1 36 Contig7649_at Contig7649 - - 2e+0 At1g52342 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At1g76760 844010 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma. - - - C.G. S.X.
0.01 2e+0 36 Glycine max GmaAffx.42903.1.S1_at CA801699 - - 8e-29 At2g38630 - C.G. S.X.
0.01 2e+0 36 Oryza sativa Os11g0151001 9639.m00450 - - 3e+0 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.211445.1.S1_s_at pmrna22433 hypothetical protein - 4e+0 At5g56760 ATSERAT1 C.G. S.X.
0.35 7e-70 266 Triticum aestivum Ta.21705.1.S1_at CD878930 - - 3e+0 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays ZmAffx.999.1.S1_at AI881222 hypothetical protein LOC100279401 - 5e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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