Gene omics information

Query gene ID	Contig8194_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig8194_at	Contig8194	-	-	2e-7	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.60	77.3	Contig13248_at	Contig13248	-	-	5e-4	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	S.X.	H.G.	Please select
0.44	58.9	Contig4042_at	Contig4042	-	-	3e-2	At1g63610	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig18300_at	Contig18300	-	-	7e-10	At5g53340	galactosyltransferase family protein	S.X.	H.G.	Please select
0.36	47.1	Contig7129_at	Contig7129	-	-	5e+0	At5g01750	unknown protein	S.X.	H.G.	Please select
0.22	24.2	Contig10799_at	Contig10799	-	-	4e-14	At5g38900	DSBA oxidoreductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-11	69	HU04L21u_at	HU04L21u	-	-	3e-1	At3g18035	HON4	C.G.	S.X.	Please select
0.02	1e-4	48	Contig23393_at	Contig23393	-	-	3e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.02	5e-4	46	Contig15497_at	Contig15497	-	-	7e+0	At5g62576	unknown protein	C.G.	S.X.	Please select
0.01	2e-3	44	Contig10300_at	Contig10300	-	-	4e-2	At4g21740	unknown protein	C.G.	S.X.	Please select
0.01	7e-3	42	Contig13889_at	Contig13889	-	-	3e-2	At3g08910	DNAJ heat shock protein, putative	C.G.	S.X.	Please select
0.02	7e-3	42	Contig19872_at	Contig19872	-	-	1e+0	At1g17520	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	7e-3	42	Contig22553_at	Contig22553	-	-	1e-3	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	C.G.	S.X.	Please select
0.01	7e-3	42	Contig6570_at	Contig6570	-	-	1e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig3841_at	Contig3841	-	-	3e-12	At5g42050	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-7	57	Arabidopsis thaliana	At4g37210	829875	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	42	Glycine max	GmaAffx.72103.1.S1_at	BE805644	-	-	1e-15	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.32	2e-98	361	Oryza sativa	Os07g0122400	AK066848.1	-	TPR repeat containing protein	3e-8	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.218501.1.S1_at	pmrna34149	hypothetical protein	-	1e-1	At2g23000	scpl10 (serine carboxypeptidase-like 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	1433	Triticum aestivum	Ta.17201.1.S1_at	CA618760	-	-	3e-4	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.04	3e-1	36	Vitis vinifera	1615876_at	CF513558	hypothetical protein LOC100248980	-	4e-12	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.29	1e-41	171	Zea mays	Zm.7707.1.S1_a_at	CK985938	Hypothetical protein LOC100193555	-	1e-2	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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