Gene omics information

Query gene ID	Contig8180_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig8180_at	Contig8180	-	-	5e-2	At5g47090	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig10831_at	Contig10831	-	-	2e-1	At1g17830	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig5839_at	Contig5839	-	-	4e-1	At5g46490	disease resistance protein (TIR-NBS class), putative	S.X.	H.G.	Please select
0.57	74.9	Contig10038_at	Contig10038	-	-	3e-15	At1g68410	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.46	61.0	Contig6579_at	Contig6579	-	-	8e-9	At4g21110	G10 family protein	S.X.	H.G.	Please select
0.44	58.9	Contig9355_s_at	Contig9355	-	-	7e+0	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	S.X.	H.G.	Please select
0.20	21.1	Contig6963_at	Contig6963	-	-	5e-11	At5g02240	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.9	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-4	46	Contig5662_at	Contig5662	-	-	3e-1	At1g49975	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig7699_at	Contig7699	-	-	2e-2	At1g62370	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig15667_at	Contig15667	-	-	2e+0	At3g58330	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig13143_s_at	Contig13143	-	-	5e+0	At5g38565	-	C.G.	S.X.	Please select
0.02	2e-2	40	Contig13143_at	Contig13143	-	-	5e+0	At5g38565	-	C.G.	S.X.	Please select
0.02	2e-2	40	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	C.G.	S.X.	Please select
0.01	1e-1	38	Contig8779_at	Contig8779	-	-	1e+1	At5g05930	guanylyl cyclase-related (GC1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12853_at	Contig12853	-	-	8e-1	At2g40440	BTB/POZ domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	40	Arabidopsis thaliana	At5g47090	834755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	HgAffx.24400.1.S1_at	CB380316	-	-	1e-4	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select
0.17	8e-64	246	Oryza sativa	Os04g0501600	AK068612.1	-	HMG-I and HMG-Y, DNA-binding domain containingprotein	4e-1	At4g34555	40S ribosomal protein S25, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-2	40	Populus trichocarpa	PtpAffx.222031.1.S1_at	pmrna39227	hypothetical protein	-	1e-1	At1g02040	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	2000	Triticum aestivum	Ta.6916.1.S1_at	BQ170280	-	-	9e-2	At5g47090	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1619747_at	CF372623	hypothetical protein LOC100247254	-	7e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.10	1e-3	44	Zea mays	Zm.6923.1.S1_at	AY104489.1	-	-	8e-1	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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