CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8174_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 95.0 Contig8174_s_at Contig8174 - - 2e-12 At3g13550 FUS9 (FUSCA 9) S.X. H.G.
0.27 32.1 HVSMEa0001E11r2_x_at HVSMEa0001E11r2 - - 3e+0 At1g75180 unknown protein S.X. H.G.
0.25 28.9 Contig20531_at Contig20531 - - 3e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) S.X. H.G.
0.23 26.1 HU14P02u_s_at HU14P02u - - 2e-1 At4g30090 emb1353 (embryo defective 1353) S.X. H.G.
0.20 21.1 HV_CEb0009O04r2_at HV_CEb0009O04r2 - - 1e+0 At2g25890 glycine-rich protein / oleosin S.X. H.G.
0.17 16.9 Contig10432_at Contig10432 - - 2e-29 At3g60750 transketolase, putative S.X. H.G.
0.16 15.3 Contig8175_at Contig8175 - - 2e-13 At5g21070 unknown protein S.X. H.G.
0.16 15.3 Contig9944_s_at Contig9944 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) S.X. H.G.
0.16 15.3 Contig10346_at Contig10346 - - 8e-1 At2g22080 unknown protein S.X. H.G.
0.16 15.3 HS05B02u_at HS05B02u - - 3e-10 At4g14240 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.1 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.0 97.9 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM372959 genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.0 96.0 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8 95.7 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1996 Contig8174_at Contig8174 - - 2e-12 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.60 3e-152 537 HT13G05r_at HT13G05r - - 3e-10 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.03 4e-3 42 Contig5465_at Contig5465 - - 2e-4 At5g60460 sec61beta family protein C.G. S.X.
0.03 4e-3 42 HS08H05u_at HS08H05u - - 2e-4 At5g60460 sec61beta family protein C.G. S.X.
0.02 7e-2 38 Contig2454_at Contig2454 phospholipid hydroperoxide glutathione peroxidase-like protein - 5e-72 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.02 7e-2 38 Contig18263_at Contig18263 - - 3e-3 At3g06200 guanylate kinase, putative C.G. S.X.
0.02 7e-2 38 Contig9230_s_at Contig9230 - - 2e+0 At1g78410 VQ motif-containing protein C.G. S.X.
0.02 7e-2 38 Contig6718_s_at Contig6718 - - 1e-8 At5g40550 unknown protein C.G. S.X.
0.01 3e-1 36 Contig16505_at Contig16505 - - 8e-7 At2g19430 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-12 73 Arabidopsis thaliana At3g13550 820557 FUS9 (FUSCA 9) Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark. - - - C.G. S.X.
0.11 1e-2 42 Glycine max Gma.1978.1.A1_at CD406861 - - 7e-9 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.46 4e-74 280 Oryza sativa OsAffx.16621.1.S1_at - - - 0 C.G. S.X.
0.05 1e-2 42 Populus trichocarpa PtpAffx.42013.1.S1_at DN489273 hypothetical protein - 2e-24 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.59 0 811 Triticum aestivum Ta.7925.2.S1_a_at BQ160949 - - 2e-5 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein C.G. S.X.
0.17 2e-29 129 Zea mays ZmAffx.534.1.A1_at AI711770 ubiquitin-conjugating enzyme E2 E3 - 3e+0 At3g50651 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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