Gene omics information

Query gene ID	Contig8164_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig8164_at	Contig8164	-	-	2e-11	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please select
0.71	87.1	HT11E22u_x_at	HT11E22u	-	-	3e+0	At1g14420	AT59	S.X.	H.G.	Please select
0.61	78.7	Contig12585_at	Contig12585	-	-	4e-1	At5g59305	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig15518_at	Contig15518	-	-	2e+0	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	S.X.	H.G.	Please select
0.60	77.3	Contig10866_at	Contig10866	-	-	3e-1	At3g19810	unknown protein	S.X.	H.G.	Please select
0.58	74.9	HVSMEl0008E13r2_at	HVSMEl0008E13r2	-	-	2e-2	At1g80640	protein kinase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig3755_at	Contig3755	-	-	5e-1	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.55	72.0	Contig24818_at	Contig24818	-	-	5e-9	At3g18090	NRPD2b	S.X.	H.G.	Please select
0.53	69.7	HU02F20u_s_at	HU02F20u	-	-	2e-5	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	S.X.	H.G.	Please select
0.53	69.7	HVSMEl0023K24r2_at	HVSMEl0023K24r2	-	-	4e+0	At4g09647	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.8	99.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
8.0	98.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
7.0	98.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.9	98.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.5	98.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-9	63	Contig9982_at	Contig9982	-	-	1e-2	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.01	5e-1	36	Contig20805_at	Contig20805	-	-	6e-1	At1g47300	F-box family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig24949_at	Contig24949	-	-	4e-1	At4g21705	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig12261_at	Contig12261	-	-	6e-2	At4g19020	CMT2 (chromomethylase 2)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6894_at	Contig6894	-	-	2e-17	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7608_at	Contig7608	-	-	2e-18	At2g31660	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig21381_at	Contig21381	-	-	2e-1	At1g70000	DNA-binding family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig19450_at	Contig19450	-	-	5e-2	At4g27620	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13099_at	Contig13099	-	-	1e+0	At5g52130	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-11	71	Arabidopsis thaliana	At4g10730	826667	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	1e-10	69	Glycine max	GmaAffx.86702.1.S1_at	AI988662	-	-	6e-28	At4g24100	protein kinase family protein	C.G.	S.X.	Please select
0.64	0	759	Oryza sativa	Os10g0518800	CB631697	-	Protein kinase domain containing protein	7e-9	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	2e-42	174	Populus trichocarpa	PtpAffx.200339.1.S1_s_at	pmrna673	hypothetical protein	-	8e-128	At4g24100	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.89	0	2748	Triticum aestivum	Ta.23232.1.S1_at	BF429112	ste20-related protein	-	3e-13	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.28	8e-33	141	Vitis vinifera	1611628_at	CD719873	-	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.22	2e-61	236	Zea mays	Zm.4237.1.A1_at	BQ172467	hypothetical protein LOC100192473	-	2e+0	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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