Gene omics information

Query gene ID	Contig8141_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig8141_at	Contig8141	-	-	2e+0	At5g07950	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.50	66.9	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.43	56.4	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.36	47.1	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	8e-113	406	HU09N18u_s_at	HU09N18u	-	-	2e+0	At1g09370	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.02	8e-2	38	Contig5752_s_at	Contig5752	-	-	8e-2	At3g09032	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	38	HU08D12u_at	HU08D12u	-	-	1e-3	At5g39380	calmodulin-binding protein-related	C.G.	S.X.	Please select
0.01	8e-2	38	Contig14751_at	Contig14751	-	-	6e-5	At5g18420	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig3909_at	Contig3909	-	-	1e-65	At5g08290	YLS8	C.G.	S.X.	Please select
0.02	8e-2	38	Contig2111_s_at	Contig2111	-	-	9e-1	At4g39745	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	3e-1	36	Contig12534_at	Contig12534	-	-	4e-1	At1g69828	-	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12061_at	Contig12061	-	-	1e+0	At1g01810	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10172_at	Contig10172	-	-	6e-1	At2g37000	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g07950	830689	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	40	Glycine max	GmaAffx.82634.1.S1_at	BM178738	-	-	3e-72	At5g16930	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.41	9e-51	202	Oryza sativa	Os07g0540200	AK105928.1	-	Conserved hypothetical protein	1e+1	At5g60615	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.212543.1.S1_at	pmrna24575	hypothetical protein	-	2e-5	At4g27670	HSP21 (HEAT SHOCK PROTEIN 21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	1e-140	500	Triticum aestivum	TaAffx.12776.1.A1_at	BJ235720	-	-	4e+0	At4g36945	phospholipase C/ phosphoric diester hydrolase	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1621396_at	CF514715	hypothetical protein LOC100243434	-	5e-13	At4g34000	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	C.G.	S.X.	Please select
0.03	3e-1	36	Zea mays	Zm.275.3.A1_at	BM378639	Ethylene receptor homologue	-	7e-2	At1g05085	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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