Gene omics information

Query gene ID	Contig8129_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	S.X.	H.G.	Please select
0.73	88.7	Contig14804_at	Contig14804	-	-	2e-11	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	S.X.	H.G.	Please select
0.67	84.7	Contig8401_at	Contig8401	casein kinase II alpha	-	7e-103	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	S.X.	H.G.	Please select
0.53	69.7	Contig21004_at	Contig21004	-	-	2e+1	At5g19030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.50	66.9	Contig13724_at	Contig13724	-	-	1e-7	At5g09770	ribosomal protein L17 family protein	S.X.	H.G.	Please select
0.50	66.9	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.5	96.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Contig17654_at	Contig17654	-	-	3e-2	At1g71690	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig1162_at	Contig1162	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	3e-1	36	Contig2994_at	Contig2994	-	-	9e-11	At1g32470	glycine cleavage system H protein, mitochondrial, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig2993_at	Contig2993	-	-	1e-10	At1g32470	glycine cleavage system H protein, mitochondrial, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig1123_s_at	Contig1123	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	1e+0	34	Contig5081_at	Contig5081	-	-	5e-7	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig1141_s_at	Contig1141	-	-	2e-12	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	1e+0	34	HT01N10w_at	HT01N10w	-	-	5e+0	At4g25510	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g23145	5007717	RALFL2 (RALF-LIKE 2)	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-3	44	Glycine max	GmaAffx.71772.1.S1_at	BE346565	-	-	6e+0	At4g36720	HVA22K (HVA22-LIKE PROTEIN K)	C.G.	S.X.	Please select
0.40	1e-83	311	Oryza sativa	OsAffx.20985.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-1	36	Populus trichocarpa	PtpAffx.113737.1.S1_at	CX170452	hypothetical protein	-	1e+0	At5g45700	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	1235	Triticum aestivum	Ta.3038.1.S1_at	CK157008	-	-	2e+0	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1621151_at	CB971601	hypothetical protein LOC100260643	-	3e-1	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please select
0.39	1e-120	432	Zea mays	Zm.9919.1.A1_at	CO517763	hypothetical protein LOC100217041	-	2e+0	At4g36720	HVA22K (HVA22-LIKE PROTEIN K)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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