Gene omics information

Query gene ID	Contig807_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	S.X.	H.G.	Please select
0.67	84.7	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.57	74.9	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	S.X.	H.G.	Please select
0.40	53.1	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	S.X.	H.G.	Please select
0.40	53.1	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.33	42.6	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.3	99.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
13.2	99.4	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
9.3	99.0	GSM160744	drought control rep2	GSE6990	Barley drought stress
8.8	98.9	GSM160815	drought control rep3	GSE6990	Barley drought stress
8.5	98.8	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
8.0	98.7	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
7.1	98.4	GSM68897	8 h control replicate 3	GSE3097	Barley1 salinity stress study
6.7	98.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
6.7	98.3	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
6.1	98.0	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1935	Contig807_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	C.G.	S.X.	Please select
0.40	2e-109	395	HVSMEa0011H12r2_x_at	HVSMEa0011H12r2	-	-	3e-2	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.30	5e-67	254	HU10M01u_x_at	HU10M01u	-	-	2e+1	At5g18748	unknown protein	C.G.	S.X.	Please select
0.21	6e-36	151	Contig7090_s_at	Contig7090	-	-	5e-40	At3g13470	chaperonin, putative	C.G.	S.X.	Please select
0.03	6e-2	38	Contig9313_at	Contig9313	-	-	3e-7	At1g26230	chaperonin, putative	C.G.	S.X.	Please select
0.01	6e-2	38	Contig5928_at	Contig5928	-	-	1e-4	At5g19400	SMG7	C.G.	S.X.	Please select
0.01	2e-1	36	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig26163_at	Contig26163	-	-	4e-7	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig15599_at	Contig15599	-	-	4e+0	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	6e-53	208	Arabidopsis thaliana	At1g55490	841996	CPN60B (CHAPERONIN 60 BETA)	encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-7	57	Glycine max	Gma.5794.1.S1_a_at	CD400361	-	-	1e-84	At5g56500	ATP binding / protein binding	C.G.	S.X.	Please select
0.34	0	638	Oryza sativa	Os06g0114000	AK101334.1	-	RuBisCO subunit binding-protein beta subunit (60kDa chaperonin beta subunit) (CPN-60 beta) (Fragment)	6e-70	At3g13470	chaperonin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	5e-57	222	Populus trichocarpa	PtpAffx.15237.1.S1_a_at	CV236833	-	-	4e-116	At3g13470	chaperonin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	0	1126	Triticum aestivum	Ta.9305.1.S1_at	BJ283294	-	-	5e-111	At1g55490	CPN60B (CHAPERONIN 60 BETA)	C.G.	S.X.	Please select
0.20	2e-19	95	Vitis vinifera	1609111_at	CF207933	hypothetical protein LOC100263832	-	2e-93	At3g13470	chaperonin, putative	C.G.	S.X.	Please select
0.39	2e-87	321	Zea mays	Zm.3461.1.A1_a_at	BU197756	RuBisCo subunit binding-protein beta subunit	-	1e-19	At3g13470	chaperonin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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