Gene omics information

Query gene ID	Contig8040_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select
0.22	24.2	Contig24535_at	Contig24535	-	-	2e-1	At3g51220	unknown protein	S.X.	H.G.	Please select
0.16	15.3	Contig16427_at	Contig16427	-	-	9e-2	At5g10120	ethylene insensitive 3 family protein	S.X.	H.G.	Please select
0.16	15.3	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please select
0.15	14.1	Contig20118_at	Contig20118	-	-	8e-22	At5g17460	unknown protein	S.X.	H.G.	Please select
0.11	9.4	Contig1193_at	Contig1193	-	-	2e-2	At1g01520	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
4.9	97.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
4.7	96.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.2	96.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.7	95.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	1e-118	426	Contig20424_at	Contig20424	-	-	2e-12	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.02	7e-3	42	Contig9013_at	Contig9013	-	-	4e-20	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.02	7e-3	42	Contig9012_s_at	Contig9012	-	-	3e-20	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig651_at	Contig651	-	-	2e-20	At4g31990	ASP5 (ASPARTATE AMINOTRANSFERASE 5)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig9661_at	Contig9661	-	-	1e-1	At1g79975	-	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4096_at	Contig4096	-	-	5e-70	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig12966_at	Contig12966	-	-	1e-11	At1g73060	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig14781_at	Contig14781	-	-	1e+0	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	6e-11	69	Arabidopsis thaliana	At3g49680	824130	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	3e-23	111	Glycine max	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.51	0	714	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	3e-23	111	Populus trichocarpa	PtpAffx.41318.1.S1_a_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	1061	Triticum aestivum	TaAffx.129191.1.S1_at	CD906345	-	-	3e-5	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please select
0.07	1e-6	54	Vitis vinifera	1622060_at	BM436271	-	-	3e-32	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.47	0	823	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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