Gene omics information

Query gene ID	Contig8007_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	91.2	Contig8007_at	Contig8007	-	-	8e-1	At2g38610	KH domain-containing protein	S.X.	H.G.	Please select
0.32	40.3	Contig9780_at	Contig9780	-	-	8e-8	At5g11040	-	S.X.	H.G.	Please select
0.32	40.3	Contig6787_at	Contig6787	-	-	7e-1	At2g36190	AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)	S.X.	H.G.	Please select
0.32	40.3	Contig21186_at	Contig21186	-	-	1e-1	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.26	30.4	Contig7762_at	Contig7762	-	-	8e-4	At2g32590	-	S.X.	H.G.	Please select
0.26	30.4	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig8972_at	Contig8972	-	-	8e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	S.X.	H.G.	Please select
0.22	24.2	Contig11033_at	Contig11033	-	-	6e-7	At2g01690	binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	95.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.2	94.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
3.2	94.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	7e-12	71	Contig11138_at	Contig11138	-	-	6e-4	At3g08620	KH domain-containing protein	C.G.	S.X.	Please select
0.02	9e-2	38	Contig6066_s_at	Contig6066	-	-	4e+0	At5g23640	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	38	Contig6066_at	Contig6066	-	-	4e+0	At5g23640	unknown protein	C.G.	S.X.	Please select
0.01	9e-2	38	Contig11648_at	Contig11648	-	-	5e-13	At5g04360	ATLDA (LIMIT DEXTRINASE)	C.G.	S.X.	Please select
0.02	4e-1	36	HVSMEb0009H14r2_x_at	HVSMEb0009H14r2	-	-	4e+0	At5g56120	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	HVSMEb0009H14r2_s_at	HVSMEb0009H14r2	-	-	4e+0	At5g56120	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig12216_at	Contig12216	-	-	6e+0	At4g39130	dehydrin family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig4795_at	Contig4795	-	-	3e-19	At5g13710	SMT1 (STEROL METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5347_at	Contig5347	-	-	1e-3	At1g17770	SUVH7 (SU(VAR)3-9 HOMOLOG 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	8e-1	36	Arabidopsis thaliana	At2g38610	818443	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-7	57	Glycine max	Gma.8009.2.S1_at	BI424216	-	-	5e-31	At2g38610	KH domain-containing protein	C.G.	S.X.	Please select
0.58	0	716	Oryza sativa	Os03g0815700	AK065405.1	-	KH, type 1 domain containing protein	8e-4	At2g38610	KH domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	8e-20	99	Populus trichocarpa	PtpAffx.147338.1.A1_a_at	CV241411	hypothetical protein	-	9e-33	At3g08620	KH domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	1471	Triticum aestivum	TaAffx.36144.1.S1_s_at	CA742002	-	-	1e-5	At3g08620	KH domain-containing protein	C.G.	S.X.	Please select
0.12	4e-9	61	Vitis vinifera	1621252_at	CB978314	hypothetical protein LOC100263936	-	2e-8	At3g08620	KH domain-containing protein	C.G.	S.X.	Please select
0.49	4e-170	597	Zea mays	Zm.4687.1.A1_at	CF635388	hypothetical protein LOC100191210	-	7e-4	At2g38610	KH domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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