Gene omics information

Query gene ID	Contig7944_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig7944_at	Contig7944	-	-	1e-1	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	S.X.	H.G.	Please select
0.50	66.9	Franka_b_3pri7_s_at	Franka_b_3pri7	Mla7 protein	-	2e+0	At4g08460	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.50	66.9	Franka_3pri12_s_at	Franka_3pri12	-	-	2e+0	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	S.X.	H.G.	Please select
0.50	66.9	Contig7226_at	Contig7226	-	-	2e-21	At3g54540	ATGCN4	S.X.	H.G.	Please select
0.21	22.6	HV14J05u_x_at	HV14J05u	-	-	6e+0	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	S.X.	H.G.	Please select
0.13	11.6	HVSMEn0025G16r2_at	HVSMEn0025G16r2	-	-	3e-7	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.7	99.5	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.8	99.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.2	99.1	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.1	99.1	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.8	99.1	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6	99.0	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.0	98.9	GSM372943	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.7	98.9	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Contig79_at	Contig79	-	-	1e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig6200_s_at	Contig6200	-	-	2e-5	At4g00585	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig16874_at	Contig16874	-	-	6e+0	At5g67010	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4024_at	Contig4024	-	-	1e-9	At4g21990	APR3 (APS REDUCTASE 3)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig5792_at	Contig5792	-	-	2e+0	At2g31730	ethylene-responsive protein, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig5352_at	Contig5352	-	-	2e+0	At5g62900	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4592_s_at	Contig4592	-	-	3e-22	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig553_s_at	Contig553	-	-	4e+0	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig12138_s_at	Contig12138	-	-	1e-4	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-1	38	Arabidopsis thaliana	At5g43370	834355	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	phosphate transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-4	48	Glycine max	PsAffx.C2000277_at	PsAffx.C2000277	-	-	2e-1	At3g46910	ubiquitin protein ligase binding	C.G.	S.X.	Please select
0.39	8e-54	212	Oryza sativa	Os08g0564000	AK119787.1	-	Phosphate transporter 6	1e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	34	Populus trichocarpa	PtpAffx.69535.2.A1_s_at	CV272173	high affinity inorganic phosphate transporter	-	2e-31	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	0	1023	Triticum aestivum	Ta.10084.1.S1_at	AF110180.1	high-affinity phosphate transporter PT1	-	3e-7	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.08	2e-1	36	Vitis vinifera	1607681_at	CD802479	hypothetical protein LOC100257925	-	5e-28	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	C.G.	S.X.	Please select
0.39	1e-79	295	Zea mays	Zm.1921.1.S1_at	AY108469.1	inorganic phosphate transporter 3	-	3e-16	At5g43340	PHT6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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