Gene omics information

Query gene ID	Contig7940_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7940_x_at	Contig7940	-	-	9e-43	At4g25550	protein binding	S.X.	H.G.	Please select
0.67	84.7	Contig5626_s_at	Contig5626	-	-	2e+0	At5g50260	cysteine proteinase, putative	S.X.	H.G.	Please select
0.60	77.3	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	S.X.	H.G.	Please select
0.43	56.4	Contig9191_at	Contig9191	-	-	2e+0	At2g18200	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig15831_at	Contig15831	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	S.X.	H.G.	Please select
0.13	11.6	Contig12004_at	Contig12004	-	-	2e-1	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
3.7	95.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2036	Contig7940_at	Contig7940	-	-	9e-43	At4g25550	protein binding	C.G.	S.X.	Please select
1.00	0	2036	Contig7940_s_at	Contig7940	-	-	9e-43	At4g25550	protein binding	C.G.	S.X.	Please select
0.60	0	958	Contig7939_at	Contig7939	-	-	2e-34	At4g25550	protein binding	C.G.	S.X.	Please select
0.03	1e-3	44	Contig3535_at	Contig3535	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.03	1e-3	44	Contig3535_s_at	Contig3535	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.01	2e-2	40	Contig6894_at	Contig6894	-	-	2e-17	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig11814_at	Contig11814	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig5553_at	Contig5553	-	-	2e+0	At4g15955	epoxide hydrolase-related	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	9e-43	174	Arabidopsis thaliana	At4g25550	828660	protein binding	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	7e-41	169	Glycine max	Gma.4672.1.S1_at	AW309912	-	-	9e-77	At4g25550	protein binding	C.G.	S.X.	Please select
0.50	0	894	Oryza sativa	Os04g0683100	AK104757.1	-	Pre-mRNA cleavage factor I 25 kDa subunit(Cleavage and polyadenylation specific factor 5, 25 kDsubunit)	8e-65	At4g25550	protein binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	7e-75	282	Populus trichocarpa	Ptp.2091.1.S1_at	CK087575	hypothetical protein	-	3e-98	At4g25550	protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	1505	Triticum aestivum	Ta.7293.2.S1_at	CA640145	-	-	2e-35	At4g25550	protein binding	C.G.	S.X.	Please select
0.46	5e-91	333	Vitis vinifera	1613970_at	CD800237	hypothetical protein LOC100266110	-	2e-74	At4g25550	protein binding	C.G.	S.X.	Please select
0.48	0	747	Zea mays	Zm.4316.1.S1_a_at	AI881448	hypothetical protein LOC100273812 /// cleavage and polyadenylation specificity factor 5	-	1e-39	At4g25550	protein binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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