CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig7916_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 55.2 Contig7916_at Contig7916 - - 5e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related S.X. H.G.
0.82 93.1 Contig7590_at Contig7590 - - 7e-1 At1g55580 LAS (Lateral Suppressor) S.X. H.G.
0.70 86.0 Contig13161_at Contig13161 - - 8e-1 At5g51760 AHG1 (ABA-hypersensitive germination 1) S.X. H.G.
0.67 84.7 Contig10686_at Contig10686 - - 4e-8 At4g24180 - S.X. H.G.
0.67 84.7 Contig7592_at Contig7592 - - 5e-1 At1g54217 Expressed protein S.X. H.G.
0.61 78.7 Contig22918_at Contig22918 - - 3e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) S.X. H.G.
0.59 75.8 Contig154_at Contig154 - - 4e-4 At4g27230 HTA2 (histone H2A) S.X. H.G.
0.58 74.9 Contig17213_at Contig17213 - - 1e+0 At2g44110 MLO15 (MILDEW RESISTANCE LOCUS O 15) S.X. H.G.
0.34 43.6 Contig17229_at Contig17229 - - 1e+1 At2g28570 unknown protein S.X. H.G.
0.32 40.3 Contig5234_at Contig5234 - - 5e-11 At1g09140 SF2/ASF-like splicing modulator (SRP30) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.5 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
13.7 99.5 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
11.7 99.3 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
11.6 99.3 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
11.5 99.3 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
5.9 97.9 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.2 97.4 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
5.1 97.3 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.7 96.9 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-12 71 AJ303111_s_at AJ303111 - - 1e+1 At3g07200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 4e-12 71 AJ303111_at AJ303111 - - 1e+1 At3g07200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 6e-2 38 Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein C.G. S.X.
0.02 6e-2 38 Contig20829_at Contig20829 - - 6e-3 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) C.G. S.X.
0.01 2e-1 36 Contig3057_s_at Contig3057 - - 8e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.03 2e-1 36 Contig25667_x_at Contig25667 - - 7e-1 At1g24000 Bet v I allergen family protein C.G. S.X.
0.03 2e-1 36 Contig25667_s_at Contig25667 - - 7e-1 At1g24000 Bet v I allergen family protein C.G. S.X.
0.01 2e-1 36 Contig3057_at Contig3057 - - 8e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.02 1e+0 34 Contig592_at Contig592 - - 2e-4 At1g11860 aminomethyltransferase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At2g21100 816645 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P - - - C.G. S.X.
0.03 7e-1 36 Glycine max PsAffx.CL1336Contig1_at PsAffx.CL1336Contig1 - - 2e+1 At5g13880 unknown protein C.G. S.X.
0.33 3e-41 171 Oryza sativa Os.7499.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.207733.1.S1_at pmrna15366 hypothetical protein - 3e-1 At5g49040 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.80 0 961 Triticum aestivum Ta.7749.1.S1_s_at CK194924 - - 6e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1615614_at CF405918 hypothetical protein LOC100245256 - 3e-7 At2g24630 ATCSLC08 C.G. S.X.
0.32 2e-57 222 Zea mays Zm.18059.1.A1_at CO522651 disease resistance response protein 206 - 8e+0 At2g24617 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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