CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig7911_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig7911_at Contig7911 - - 2e-4 At4g28400 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.82 93.1 HY03E10u_s_at HY03E10u - - 1e+1 At5g63060 transporter S.X. H.G.
0.74 89.1 Contig1139_s_at Contig1139 - - 1e-19 At3g07110 60S ribosomal protein L13A (RPL13aA) S.X. H.G.
0.67 84.7 Contig1434_s_at Contig1434 - - 2e-1 At5g58580 ATL63 (ARABIDOPSIS TÓ S.X. H.G.
0.67 84.7 Contig13274_at Contig13274 - - 9e-3 At1g71690 unknown protein S.X. H.G.
0.59 75.8 Contig20455_at Contig20455 - - 2e+0 At5g48220 indole-3-glycerol phosphate synthase, putative S.X. H.G.
0.59 75.8 Contig18744_at Contig18744 - - 2e+0 At5g41630 F-box family protein S.X. H.G.
0.35 45.1 Contig26395_at Contig26395 - - 5e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 99.3 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.2 99.0 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
8.7 98.9 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
8.6 98.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.2 98.7 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
8.2 98.7 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.7 98.6 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.7 98.6 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
7.3 98.5 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3 98.5 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-10 65 Contig23381_at Contig23381 - - 2e+0 At3g05327 - C.G. S.X.
0.02 2e-2 40 Contig6130_at Contig6130 - - 4e+0 At3g15260 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 2e-2 40 Contig6131_s_at Contig6131 - - 2e+0 At2g20630 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e-1 36 HV_CEb0022F09r2_at HV_CEb0022F09r2 - - 4e+0 At5g07250 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) C.G. S.X.
0.02 3e-1 36 Contig13811_at Contig13811 - - 4e-2 At2g20630 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.01 3e-1 36 Contig9144_at Contig9144 - - 1e-15 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) C.G. S.X.
0.01 5e+0 32 Contig21718_at Contig21718 - - 3e-1 At1g07080 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein C.G. S.X.
0.02 5e+0 32 HM06D06r_at HM06D06r - - 1e+0 At2g26511 unknown protein C.G. S.X.
0.01 5e+0 32 Contig15726_at Contig15726 - - 6e-1 At3g10190 calmodulin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-4 48 Arabidopsis thaliana At4g28400 828957 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:cellular_component unknown;PMOBFVA - - - C.G. S.X.
0.06 3e-4 48 Glycine max Gma.8370.1.S1_at BQ454087 - - 4e-4 At2g20630 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.52 5e-105 383 Oryza sativa Os07g0507000 CB668038 - Protein phosphatase 2C 1e-5 At4g28400 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.15 3e-7 57 Populus trichocarpa PtpAffx.70419.1.A1_at CV244113 - - 2e-10 At3g15260 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.85 0 1846 Triticum aestivum Ta.7482.1.S1_at CD871466 - - 3e-3 At3g15260 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.09 6e-8 57 Vitis vinifera 1612226_at CB974061 hypothetical protein LOC100259151 - 1e-29 At1g22280 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.49 2e-150 531 Zea mays Zm.5159.1.A1_at CA403363 hypothetical protein LOC100191167 - 1e-2 At4g28400 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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