Gene omics information

Query gene ID	Contig7909_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig7909_at	Contig7909	-	-	3e+0	At4g33750	-	S.X.	H.G.	Please select
0.69	85.5	Contig3250_at	Contig3250	-	-	1e-68	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	S.X.	H.G.	Please select
0.67	84.7	HVSMEf0016E08r2_at	HVSMEf0016E08r2	-	-	4e+0	At5g07880	SNAP29	S.X.	H.G.	Please select
0.65	81.4	Contig2185_at	Contig2185	-	-	4e-99	At1g06430	FTSH8	S.X.	H.G.	Please select
0.64	80.9	rbaak32b03_s_at	rbaak32b03	-	-	4e-13	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	S.X.	H.G.	Please select
0.61	78.7	Contig7047_at	Contig7047	-	-	7e-2	At5g03660	unknown protein	S.X.	H.G.	Please select
0.59	75.8	Contig6534_at	Contig6534	-	-	3e-7	At1g26930	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.55	72.0	HW04B18u_s_at	HW04B18u	-	-	8e+0	At5g09560	KH domain-containing protein	S.X.	H.G.	Please select
0.55	72.0	Contig7843_at	Contig7843	-	-	1e+0	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	S.X.	H.G.	Please select
0.54	70.3	Contig21820_at	Contig21820	-	-	2e+0	At5g59820	RHL41 (RESPONSIVE TO HIGH LIGHT 41)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.8	97.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.8	97.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
4.0	96.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-71	268	Contig7910_at	Contig7910	-	-	2e+0	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.03	1e+0	32	HY09G09u_at	HY09G09u	-	-	1e+0	At1g15045	-	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8927_at	Contig8927	-	-	2e-8	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig5801_at	Contig5801	-	-	4e-25	At3g52140	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	6e+0	30	Contig6817_at	Contig6817	-	-	2e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select
0.01	6e+0	30	Contig19175_at	Contig19175	-	-	1e-1	At1g10680	PGP10 (P-GLYCOPROTEIN 10)	C.G.	S.X.	Please select
0.04	6e+0	30	EBro08_SQ003_E07_at	EBro08_SQ003_E07	-	-	5e-2	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	C.G.	S.X.	Please select
0.01	6e+0	30	Contig5841_at	Contig5841	-	-	4e-6	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig16394_at	Contig16394	-	-	7e-1	At2g04530	CPZ	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At4g33750	-	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.8919.1.S1_at	BU762624	-	-	3e+0	At5g52545	unknown protein	C.G.	S.X.	Please select
0.13	5e-16	85	Oryza sativa	Os05g0251400	AK103883.1	-	Conserved hypothetical protein	6e-4	At1g03180	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.94885.1.S1_s_at	CV267739	hypothetical protein	-	1e-1	At2g32770	purple acid phosphatase (PAP13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	2e-106	385	Triticum aestivum	TaAffx.128743.1.S1_at	BJ219044	-	-	9e+0	At4g14695	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	30	Vitis vinifera	1613092_at	CF511904	-	-	6e+0	At3g24110	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.11	4e-22	103	Zea mays	Zm.17725.1.A1_at	CK370263	-	-	2e+0	At4g33750	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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