Gene omics information

Query gene ID	Contig7904_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	S.X.	H.G.	Please select
0.50	66.9	Contig8311_at	Contig8311	-	-	5e-15	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.46	61.0	Contig332_at	Contig332	-	-	3e-6	At5g54670	ATK3 (ARABIDOPSIS THALIANA KINESIN 3)	S.X.	H.G.	Please select
0.44	58.9	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	S.X.	H.G.	Please select
0.44	58.9	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select
0.40	53.1	Contig12612_at	Contig12612	-	-	5e-3	At1g01170	ozone-responsive stress-related protein, putative	S.X.	H.G.	Please select
0.31	38.6	Contig15889_at	Contig15889	-	-	2e+0	At4g29590	methyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	99.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.8	99.5	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	1e-41	171	Contig16651_at	Contig16651	-	-	3e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.20	3e-17	89	Contig5344_at	Contig5344	-	-	2e-8	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.02	2e-9	63	Contig20669_at	Contig20669	-	-	4e-1	At4g03150	unknown protein	C.G.	S.X.	Please select
0.02	5e-7	56	Contig1168_at	Contig1168	-	-	7e-10	At4g28450	nucleotide binding / protein binding	C.G.	S.X.	Please select
0.02	1e-4	48	Contig9582_at	Contig9582	-	-	5e-4	At5g52970	thylakoid lumen 15.0 kDa protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig24573_at	Contig24573	-	-	7e+0	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8323_at	Contig8323	-	-	3e+0	Atmg00890	-	C.G.	S.X.	Please select
0.01	4e-1	36	Contig22558_at	Contig22558	-	-	4e-2	At1g28100	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig18184_at	Contig18184	-	-	1e+1	At4g10450	60S ribosomal protein L9 (RPL90D)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-4	48	Arabidopsis thaliana	At5g01220	831888	SQD2 (sulfoquinovosyldiacylglycerol 2)	involved in sulfolipid biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	4e-10	67	Glycine max	Gma.10050.1.S1_at	BE609142	-	-	2e-19	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.58	0	1318	Oryza sativa	Os03g0265100	AK105267.1	-	Glycosyl transferase, group 1 domain containingprotein	1e-6	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	46	Populus trichocarpa	Ptp.5041.2.S1_a_at	BI126823	hypothetical protein	-	3e-14	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	2089	Triticum aestivum	Ta.10498.1.S1_a_at	BQ172328	-	-	3e-6	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1609943_at	CB349825	-	-	5e-6	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select
0.29	6e-74	278	Zea mays	Zm.4612.1.A1_at	AI737341	-	-	5e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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