CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig78_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig78_s_at Contig78 - - 4e-5 At1g15690 AVP1 S.X. H.G.
0.50 66.9 Contig20846_at Contig20846 - - 3e-6 At4g36860 zinc ion binding S.X. H.G.
0.50 66.9 Contig18444_at Contig18444 - - 2e+0 At1g08650 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) S.X. H.G.
0.36 47.1 Contig1682_at Contig1682 - - 2e+0 At4g24972 TPD1 (TAPETUM DETERMINANT 1) S.X. H.G.
0.24 27.2 Contig18440_at Contig18440 - - 2e+0 At3g56590 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.19 19.6 Contig14353_at Contig14353 - - 9e-3 At1g49950 DNA-binding protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.7 99.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
36.3 99.9 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
36.1 99.9 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
36.1 99.9 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
35.5 99.9 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
35.5 99.9 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
26.5 99.8 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
26.3 99.8 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
23.2 99.8 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
23.2 99.8 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 0 936 Contig555_at Contig555 - - 3e-5 At1g15690 AVP1 C.G. S.X.
0.16 3e-87 321 Contig225_at Contig225 - - 1e-4 At1g15690 AVP1 C.G. S.X.
0.16 6e-30 131 Contig840_s_at Contig840 vacuolar proton-inorganic pyrophosphatase - 3e-26 At1g15690 AVP1 C.G. S.X.
0.12 9e-23 107 Contig385_s_at Contig385 - - 1e-22 At1g15690 AVP1 C.G. S.X.
0.02 7e-2 38 Contig12669_at Contig12669 - - 1e-32 At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative C.G. S.X.
0.02 3e-1 36 Contig25578_at Contig25578 - - 2e-5 At1g67080 ABA4 (abscisic acid (ABA)-deficient 4) C.G. S.X.
0.02 3e-1 36 Contig14153_s_at Contig14153 - - 1e-14 At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative C.G. S.X.
0.01 3e-1 36 Contig6939_at Contig6939 - - 2e-1 At5g16030 unknown protein C.G. S.X.
0.01 1e+0 34 Contig5737_at Contig5737 - - 2e-1 At2g36261 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-5 50 Arabidopsis thaliana At1g15690 838138 AVP1 Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. - - - C.G. S.X.
0.09 5e-2 40 Glycine max Gma.5427.1.S1_at BM091753 - - 9e-158 At1g15690 AVP1 C.G. S.X.
0.55 0 825 Oryza sativa Os05g0157000 AK109809.1 - Conserved hypothetical protein 3e+0 At3g06280 - C.G. S.X.
0.12 2e-7 57 Populus trichocarpa Ptp.6524.1.S1_s_at BU863669 vacuolar H+-translocating inorganic pyrophosphatase - 0 At1g15690 AVP1 C.G. S.X.
0.54 0 1576 Triticum aestivum Ta.1322.1.S1_x_at BQ609727 - - 1e-7 At1g15690 AVP1 C.G. S.X.
0.09 3e-12 71 Vitis vinifera 1621283_at AF257777.1 H+-pyrophosphatase - 1e-93 At1g15690 AVP1 C.G. S.X.
0.38 1e-98 359 Zea mays Zm.15650.1.A1_at CD436607 pyrophosphate-energized vacuolar membrane proton pump - 2e-6 At1g15690 AVP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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