Gene omics information

Query gene ID Contig78_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig78_s_atContig78--4e-5At1g15690AVP1S.X.H.G.
0.5066.9Contig20846_atContig20846--3e-6At4g36860zinc ion bindingS.X.H.G.
0.5066.9Contig18444_atContig18444--2e+0At1g08650PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)S.X.H.G.
0.3647.1Contig1682_atContig1682--2e+0At4g24972TPD1 (TAPETUM DETERMINANT 1)S.X.H.G.
0.2427.2Contig18440_atContig18440--2e+0At3g56590hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.1919.6Contig14353_atContig14353--9e-3At1g49950DNA-binding protein, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.799.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
36.399.9GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stress
36.199.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spike
36.199.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stress
35.599.9GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spike
35.599.9GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stress
26.599.8GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
26.399.8GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stress
23.299.8GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spike
23.299.8GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.690936Contig555_atContig555--3e-5At1g15690AVP1C.G.S.X.
0.163e-87321Contig225_atContig225--1e-4At1g15690AVP1C.G.S.X.
0.166e-30131Contig840_s_atContig840vacuolar proton-inorganic pyrophosphatase-3e-26At1g15690AVP1C.G.S.X.
0.129e-23107Contig385_s_atContig385--1e-22At1g15690AVP1C.G.S.X.
0.027e-238Contig12669_atContig12669--1e-32At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeC.G.S.X.
0.023e-136Contig25578_atContig25578--2e-5At1g67080ABA4 (abscisic acid (ABA)-deficient 4)C.G.S.X.
0.023e-136Contig14153_s_atContig14153--1e-14At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeC.G.S.X.
0.013e-136Contig6939_atContig6939--2e-1At5g16030unknown proteinC.G.S.X.
0.011e+034Contig5737_atContig5737--2e-1At2g36261unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-550Arabidopsis thalianaAt1g15690838138AVP1Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.---C.G.S.X.
0.095e-240Glycine maxGma.5427.1.S1_atBM091753--9e-158At1g15690AVP1C.G.S.X.
0.550825Oryza sativaOs05g0157000AK109809.1-Conserved hypothetical protein3e+0At3g06280-C.G.S.X.
0.122e-757Populus trichocarpaPtp.6524.1.S1_s_atBU863669vacuolar H+-translocating inorganic pyrophosphatase-0At1g15690AVP1C.G.S.X.
0.5401576Triticum aestivumTa.1322.1.S1_x_atBQ609727--1e-7At1g15690AVP1C.G.S.X.
0.093e-1271Vitis vinifera1621283_atAF257777.1H+-pyrophosphatase-1e-93At1g15690AVP1C.G.S.X.
0.381e-98359Zea maysZm.15650.1.A1_atCD436607pyrophosphate-energized vacuolar membrane proton pump-2e-6At1g15690AVP1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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