Gene omics information

Query gene ID	Contig7886_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	S.X.	H.G.	Please select
0.60	77.3	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please select
0.47	62.2	Contig17036_at	Contig17036	-	-	4e-7	At3g27720	zinc finger protein-related	S.X.	H.G.	Please select
0.46	61.0	Contig11980_at	Contig11980	-	-	3e-2	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	S.X.	H.G.	Please select
0.33	42.6	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.30	37.0	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
286.6	100.0	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
64.5	100.0	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
9.1	98.9	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
3.5	95.1	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
3.5	95.1	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.2	94.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
2.2	90.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
1.8	87.4	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
1.8	87.4	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1580	Contig7887_at	Contig7887	-	-	2e+0	At5g66640	DAR3 (DA1-RELATED PROTEIN 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11584_at	Contig11584	-	-	5e-1	At5g25070	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig5706_at	Contig5706	cellulose synthase-like CslF6	-	8e-2	At5g11600	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11518_at	Contig11518	-	-	5e-9	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEa0011L07r2_at	HVSMEa0011L07r2	-	-	1e+1	At5g37270	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig21135_at	Contig21135	-	-	2e+0	At2g10340	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16311_at	Contig16311	-	-	5e+0	At5g18920	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g39790	833975	5'-AMP-activated protein kinase beta-1 subunit-related	Encodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	Gma.6732.2.S1_at	AW351239	-	-	6e+0	At5g49850	jacalin lectin family protein	C.G.	S.X.	Please select
0.15	3e-7	57	Oryza sativa	Os12g0228700	BX900947	-	Beta-glucosidase aggregating factor	7e-2	At5g07380	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.4227.1.S1_at	CV263321	hypothetical protein	-	5e-1	At3g59870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	777	Triticum aestivum	Ta.25479.1.S1_at	CA645926	-	-	2e+0	At5g07640	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1618561_at	CF204500.1	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.16	6e-8	57	Zea mays	Zm.4999.1.S1_at	AI600285	-	-	7e-1	At5g04047	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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