CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig77_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.98 100.0 Contig77_s_at Contig77 - - 3e-4 At2g02850 ARPN (PLANTACYANIN) S.X. H.G.
0.40 53.1 Contig9226_at Contig9226 - - 3e-3 At1g58080 ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1) S.X. H.G.
0.37 47.9 Contig333_M_at Contig333_M - - 0 S.X. H.G.
0.33 42.6 Contig7662_at Contig7662 - - 5e+0 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) S.X. H.G.
0.32 40.3 Contig4380_at Contig4380 - - 2e-2 At2g33450 50S ribosomal protein L28, chloroplast (CL28) S.X. H.G.
0.29 35.5 Contig278_at Contig278 - - 9e-41 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) S.X. H.G.
0.23 26.1 HVSMEm0005B12r2_at HVSMEm0005B12r2 - - 3e-1 At3g23727 SCRL12 (SCR-Like 12) S.X. H.G.
0.22 24.2 Contig523_x_at Contig523 B3-hordein fragment - 6e-1 At5g53590 auxin-responsive family protein S.X. H.G.
0.22 24.2 Contig8913_at Contig8913 - - 3e-9 At1g22200 unknown protein S.X. H.G.
0.22 24.2 Contig23773_at Contig23773 - - 1e+0 At5g14070 ROXY2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
151.7 100.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
108.3 100.0 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
53.5 100.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
36.4 99.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
13.0 99.4 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
13.0 99.4 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.1 94.1 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 0 807 Contig195_at Contig195 - - 2e-19 At2g40205 60S ribosomal protein L41 (RPL41C) C.G. S.X.
0.63 6e-115 412 Contig12818_at Contig12818 - - 8e-2 At2g02850 ARPN (PLANTACYANIN) C.G. S.X.
0.11 5e-35 147 Contig336_at Contig336 - - 4e-1 At5g66580 unknown protein C.G. S.X.
0.09 6e-4 44 Contig7990_at Contig7990 - - 1e+0 At4g38060 unknown protein C.G. S.X.
0.04 6e-4 44 Contig16272_at Contig16272 - - 2e+0 At3g22030 receptor-like protein kinase-related C.G. S.X.
0.07 1e-1 36 Contig25923_at Contig25923 - - 1e+0 At5g21060 homoserine dehydrogenase family protein C.G. S.X.
0.04 1e-1 36 Contig17334_at Contig17334 - - 3e-5 At1g72230 plastocyanin-like domain-containing protein C.G. S.X.
0.02 1e-1 36 Contig5257_at Contig5257 - - 1e+0 At4g00200 DNA binding C.G. S.X.
0.02 5e-1 34 Contig12582_at Contig12582 - - 5e-17 At5g13010 EMB3011 (embryo defective 3011) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-4 46 Arabidopsis thaliana At2g02850 814816 ARPN (PLANTACYANIN) Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. - - - C.G. S.X.
0.03 3e-2 40 Glycine max GmaAffx.6095.1.A1_at BI470446 - - 5e-3 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.22 3e-24 113 Oryza sativa Os02g0256800 9630.m01472 - Plastocyanin-like domain containing protein 3e+0 At3g63095 - C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.33971.1.S1_at BP922830 hypothetical protein - 1e+0 At5g27390 - C.G. S.X.
0.74 9e-131 466 Triticum aestivum Ta.9327.1.S1_at BJ236447 - - 1e+0 At2g27590 unknown protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1615155_at CF210513 - - 2e+1 At5g34869 unknown protein C.G. S.X.
0.10 5e-4 44 Zea mays Zm.10013.1.A1_at CF629073 chemocyanin - 6e+0 At5g26890 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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