Gene omics information

Query gene ID	Contig7725_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.60	77.3	Contig4512_s_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	S.X.	H.G.	Please select
0.55	72.0	rbags22i06_at	rbags22i06	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	S.X.	H.G.	Please select
0.53	69.7	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.44	58.9	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	S.X.	H.G.	Please select
0.33	42.6	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.3	97.4	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.2	96.3	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-3	42	Contig10942_at	Contig10942	-	-	3e+0	At5g39330	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8240_s_at	Contig8240	-	-	5e+0	At4g12825	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8240_at	Contig8240	-	-	5e+0	At4g12825	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig25632_at	Contig25632	-	-	1e+0	At3g63120	CYCP1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16003_at	Contig16003	-	-	4e-1	At4g09260	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8677_at	Contig8677	-	-	2e-8	At3g44330	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8241_at	Contig8241	-	-	1e+0	At4g19390	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6055_at	Contig6055	-	-	2e-5	At5g06160	ATO (ATROPOS)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3640_at	Contig3640	-	-	5e-64	At4g23100	GSH1 (GLUTAMATE-CYSTEINE LIGASE)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	36	Arabidopsis thaliana	At1g22180	838823	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-14	81	Glycine max	GmaAffx.92391.1.S1_at	CF808116	-	-	9e-2	At2g23040	unknown protein	C.G.	S.X.	Please select
0.46	0	757	Oryza sativa	Os.6076.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-5	50	Populus trichocarpa	PtpAffx.28932.1.S1_at	CV256318	hypothetical protein	-	2e-7	At4g08690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1342	Triticum aestivum	Ta.3003.3.A1_at	CN010824	-	-	6e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1612758_at	CB837949	-	-	2e-2	At5g20510	AL5 (ALFIN-LIKE 5)	C.G.	S.X.	Please select
0.44	0	690	Zea mays	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage