Gene omics information

Query gene ID	Contig7712_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig7712_at	Contig7712	-	-	2e+0	At1g32700	zinc-binding family protein	S.X.	H.G.	Please select
0.50	66.9	Contig7711_s_at	Contig7711	-	-	6e-1	At1g12110	NRT1.1	S.X.	H.G.	Please select
0.40	53.1	Contig11963_s_at	Contig11963	-	-	1e+0	At2g39080	binding / catalytic	S.X.	H.G.	Please select
0.04	3.4	Contig8568_s_at	Contig8568	-	-	7e+0	At5g63440	unknown protein	S.X.	H.G.	Please select
0.03	2.6	Contig10683_at	Contig10683	-	-	8e-3	At3g44620	protein tyrosine phosphatase	S.X.	H.G.	Please select
0.02	1.8	HV_CEb0024B09r2_s_at	HV_CEb0024B09r2	-	-	1e-2	At3g16500	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.4	99.7	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.2	99.6	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.8	99.3	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.7	98.9	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.3	98.8	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.1	98.7	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM160464	drought control rep1	GSE6990	Barley drought stress
6.4	98.1	GSM160815	drought control rep3	GSE6990	Barley drought stress
6.1	98.0	GSM160744	drought control rep2	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	761	Contig7710_at	Contig7710	-	-	3e-2	At2g39430	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please select
0.26	3e-35	149	Contig7711_s_at	Contig7711	-	-	6e-1	At1g12110	NRT1.1	C.G.	S.X.	Please select
0.26	3e-35	149	Contig7711_at	Contig7711	-	-	6e-1	At1g12110	NRT1.1	C.G.	S.X.	Please select
0.08	6e-15	81	Contig18816_at	Contig18816	-	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	C.G.	S.X.	Please select
0.04	1e-3	44	Contig6574_at	Contig6574	-	-	2e-2	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	C.G.	S.X.	Please select
0.02	5e-3	42	Contig7897_at	Contig7897	-	-	7e-3	At1g72140	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Contig5401_s_at	Contig5401	-	-	1e-39	At1g03475	LIN2 (LESION INITIATION 2)	C.G.	S.X.	Please select
0.02	5e-3	42	Contig5401_at	Contig5401	-	-	1e-39	At1g03475	LIN2 (LESION INITIATION 2)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig7895_at	Contig7895	-	-	2e+0	At4g08406	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g32700	840164	zinc-binding family protein	F:binding;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	Gma.9839.2.S1_at	BM522484	-	-	2e-4	At2g28790	osmotin-like protein, putative	C.G.	S.X.	Please select
0.55	4e-127	456	Oryza sativa	Os10g0554200	AK105765.1	-	Nitrate transporter	2e-2	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-10	65	Populus trichocarpa	Ptp.7434.1.A1_s_at	CV256310	hypothetical protein	-	2e-3	At2g16005	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	1451	Triticum aestivum	TaAffx.3769.1.A1_at	CA650685	-	-	9e+0	At2g47170	ARF1A1C	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1621736_at	CB971719	hypothetical protein LOC100247202	-	1e-9	At3g08950	electron transport SCO1/SenC family protein	C.G.	S.X.	Please select
0.19	3e-44	178	Zea mays	Zm.1482.2.A1_at	CO531725	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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